RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 TTYH2Q9BSA4 534 aa19.81■□□□□ 0.76
SDC3-202ENST00000339394 KRCC1Q9NPI7 259 aaPredicted RBP19.81■□□□□ 0.76
SDC3-202ENST00000339394 C6orf203Q9P0P8 240 aaPredicted RBP19.81■□□□□ 0.76
SDC3-202ENST00000339394 TMEM5Q9Y2B1 443 aa19.81■□□□□ 0.76
SDC3-202ENST00000339394 ZGRF1Q86YA3 2104 aa19.81■□□□□ 0.76
SDC3-202ENST00000339394 GTF3C1Q12789 2109 aa19.8■□□□□ 0.76
SDC3-202ENST00000339394 H0YHG0 523 aa19.8■□□□□ 0.76
SDC3-202ENST00000339394 RAMP1O60894 148 aa19.8■□□□□ 0.76
SDC3-202ENST00000339394 SAGP10523 405 aaPredicted RBP19.8■□□□□ 0.76
SDC3-202ENST00000339394 P2RY4P51582 365 aa19.8■□□□□ 0.76
SDC3-202ENST00000339394 ARHGDIAP52565 204 aa19.8■□□□□ 0.76
SDC3-202ENST00000339394 OTUD3Q5T2D3 398 aaPredicted RBP19.8■□□□□ 0.76
SDC3-202ENST00000339394 C1orf94Q6P1W5 598 aa19.8■□□□□ 0.76
SDC3-202ENST00000339394 PGBD2Q6P3X8 592 aa19.8■□□□□ 0.76
SDC3-202ENST00000339394 SHQ1Q6PI26 577 aaKnown RBP19.8■□□□□ 0.76
SDC3-202ENST00000339394 H1FNTQ75WM6 255 aaPredicted RBP19.8■□□□□ 0.76
SDC3-202ENST00000339394 SCAIQ8N9R8 606 aa19.8■□□□□ 0.76
SDC3-202ENST00000339394 RNF128Q8TEB7 428 aa19.8■□□□□ 0.76
SDC3-202ENST00000339394 GIPC3Q8TF64 312 aa19.8■□□□□ 0.76
SDC3-202ENST00000339394 NAA11Q9BSU3 229 aaPredicted RBP19.8■□□□□ 0.76
SDC3-202ENST00000339394 ASPNQ9BXN1 380 aa19.8■□□□□ 0.76
SDC3-202ENST00000339394 MRPL39Q9NYK5 338 aaKnown RBP19.8■□□□□ 0.76
SDC3-202ENST00000339394 PDP1Q9P0J1 537 aaPredicted RBP19.8■□□□□ 0.76
SDC3-202ENST00000339394 B3GALT5Q9Y2C3 310 aa19.8■□□□□ 0.76
SDC3-202ENST00000339394 MAGED1Q9Y5V3 778 aaPredicted RBP19.8■□□□□ 0.76
SDC3-202ENST00000339394 MBD3L4A6NDZ8 208 aaPredicted RBP19.79■□□□□ 0.76
SDC3-202ENST00000339394 MBD3L3A6NE82 208 aaPredicted RBP19.79■□□□□ 0.76
SDC3-202ENST00000339394 MBD3L5A6NJ08 208 aaPredicted RBP19.79■□□□□ 0.76
SDC3-202ENST00000339394 AQP7P3A6NL99 342 aa19.79■□□□□ 0.76
SDC3-202ENST00000339394 EFCAB9A8MZ26 197 aa19.79■□□□□ 0.76
SDC3-202ENST00000339394 E9PLN8 166 aa19.79■□□□□ 0.76
SDC3-202ENST00000339394 GASTP01350 101 aa19.79■□□□□ 0.76
SDC3-202ENST00000339394 P4HA3Q7Z4N8 544 aa19.79■□□□□ 0.76
SDC3-202ENST00000339394 PQLC1Q8N2U9 271 aa19.79■□□□□ 0.76
SDC3-202ENST00000339394 C9orf106Q8NAJ2 232 aa19.79■□□□□ 0.76
SDC3-202ENST00000339394 OR10G2Q8NGC3 310 aa19.79■□□□□ 0.76
SDC3-202ENST00000339394 OR5J2Q8NH18 312 aa19.79■□□□□ 0.76
SDC3-202ENST00000339394 MBD3L2Q8NHZ7 208 aaPredicted RBP19.79■□□□□ 0.76
SDC3-202ENST00000339394 ABHD3Q8WU67 409 aa19.79■□□□□ 0.76
SDC3-202ENST00000339394 NRBF2Q96F24 287 aa19.79■□□□□ 0.76
SDC3-202ENST00000339394 VKORC1Q9BQB6 163 aa19.79■□□□□ 0.76
SDC3-202ENST00000339394 RNF122Q9H9V4 155 aa19.79■□□□□ 0.76
SDC3-202ENST00000339394 CHST11Q9NPF2 352 aa19.79■□□□□ 0.76
SDC3-202ENST00000339394 MEMO1Q9Y316 297 aa19.79■□□□□ 0.76
SDC3-202ENST00000339394 KLF4O43474 513 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 CYTIPO60759 359 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 TOXO94900 526 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 BAG2O95816 211 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 HIST1H2ABP04908 130 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 GLI4P10075 376 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 FCGR2AP12318 317 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 PMPCAQ10713 525 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 PMS2P3Q13401 168 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 HIST3H2AQ7L7L0 130 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 SLC43A2Q8N370 569 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 KDM8Q8N371 416 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 MARVELD2Q8N4S9 558 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 AQP11Q8NBQ7 271 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 OR5K1Q8NHB7 308 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 HIST1H2ACQ93077 130 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 KLHL13Q9P2N7 655 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 ARRDC5A6NEK1 342 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 G3V2T6 193 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 CCL21O00585 134 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 PLPP3O14495 311 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 POU2F1P14859 743 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 PRKACGP22612 351 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 TIMP3P35625 211 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 RCN1Q15293 331 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 TMEM225Q6GV28 225 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 OAFQ86UD1 273 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 ICA1LQ8NDH6 482 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 DMRTA2Q96SC8 542 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 FEVQ99581 238 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 TM9SF2Q99805 663 aa19.78■□□□□ 0.76
SDC3-202ENST00000339394 MS4A18H0YCH9 400 aa19.77■□□□□ 0.76
SDC3-202ENST00000339394 BLOC1S5-TXNDC5H3BN57 136 aa19.77■□□□□ 0.76
SDC3-202ENST00000339394 ZNF23P17027 643 aa19.77■□□□□ 0.76
SDC3-202ENST00000339394 FPR3P25089 353 aa19.77■□□□□ 0.76
SDC3-202ENST00000339394 SLC9A3P48764 834 aa19.77■□□□□ 0.76
SDC3-202ENST00000339394 RASGEF1BQ0VAM2 473 aa19.77■□□□□ 0.76
SDC3-202ENST00000339394 MS4A18Q3C1V0 323 aa19.77■□□□□ 0.76
SDC3-202ENST00000339394 GTF2IRD2BQ6EKJ0 949 aa19.77■□□□□ 0.76
SDC3-202ENST00000339394 ABLIM2Q6H8Q1 611 aa19.77■□□□□ 0.76
SDC3-202ENST00000339394 NCCRP1Q6ZVX7 275 aaPredicted RBP19.77■□□□□ 0.76
SDC3-202ENST00000339394 NANOGNBQ7Z5D8 188 aa19.77■□□□□ 0.76
SDC3-202ENST00000339394 GPAT4Q86UL3 456 aa19.77■□□□□ 0.76
SDC3-202ENST00000339394 GTF2IRD2Q86UP8 949 aa19.77■□□□□ 0.76
SDC3-202ENST00000339394 FJX1Q86VR8 437 aa19.77■□□□□ 0.76
SDC3-202ENST00000339394 HIPK1Q86Z02 1210 aa19.77■□□□□ 0.76
SDC3-202ENST00000339394 ZDHHC13Q8IUH4 622 aa19.77■□□□□ 0.76
SDC3-202ENST00000339394 ADPRHL1Q8NDY3 354 aa19.77■□□□□ 0.76
SDC3-202ENST00000339394 OR13C2Q8NGS9 318 aa19.77■□□□□ 0.76
SDC3-202ENST00000339394 OR51A7Q8NH64 312 aa19.77■□□□□ 0.76
SDC3-202ENST00000339394 GNPDA2Q8TDQ7 276 aa19.77■□□□□ 0.76
SDC3-202ENST00000339394 PSD2Q9BQI7 771 aa19.77■□□□□ 0.76
SDC3-202ENST00000339394 TAS2R5Q9NYW4 299 aa19.77■□□□□ 0.76
SDC3-202ENST00000339394 ING1Q9UK53 422 aaPredicted RBP19.77■□□□□ 0.76
SDC3-202ENST00000339394 OAZ3Q9UMX2 235 aa19.77■□□□□ 0.76
SDC3-202ENST00000339394 TRAV27A0A087WT01 109 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms