RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 EXOGQ9Y2C4 368 aaKnown RBP13.99□□□□□ -0.17
LIMS1-202ENST00000338045 LSM2Q9Y333 95 aaKnown RBP13.99□□□□□ -0.17
LIMS1-202ENST00000338045 SLC6A5Q9Y345 797 aa13.99□□□□□ -0.17
LIMS1-202ENST00000338045 ADAM18Q9Y3Q7 739 aa13.99□□□□□ -0.17
LIMS1-202ENST00000338045 CPAMD8Q8IZJ3 1885 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 FTCDNL1E5RQL4 147 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 H3BMQ9 156 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 SNPHO15079 494 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 OR2T1O43869 369 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 AHSA1O95433 338 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 TXNDC12O95881 172 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 SLC2A5P22732 501 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 GSTT1P30711 240 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 NOVA1P51513 510 aaKnown RBP13.98□□□□□ -0.17
LIMS1-202ENST00000338045 RPL18Q07020 188 aaKnown RBP13.98□□□□□ -0.17
LIMS1-202ENST00000338045 SGCBQ16585 318 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 TIGD6Q17RP2 521 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 DCAF10Q5QP82 559 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 SLC16A12Q6ZSM3 486 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 MAMDC2Q7Z304 686 aaPredicted RBP13.98□□□□□ -0.17
LIMS1-202ENST00000338045 PROKR2Q8NFJ6 384 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 OR4K17Q8NGC6 315 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 RAB2BQ8WUD1 216 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 KISS1RQ969F8 398 aaPredicted RBP13.98□□□□□ -0.17
LIMS1-202ENST00000338045 COG8Q96MW5 612 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 OR11A1Q9GZK7 315 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 PTGES2Q9H7Z7 377 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 MED20Q9H944 212 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 ENPP5Q9UJA9 477 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 ERGIC3Q9Y282 383 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 PTPRBP23467 1997 aa13.98□□□□□ -0.17
LIMS1-202ENST00000338045 CCDC182A6NF36 153 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 IMPA2O14732 288 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 FZD7O75084 574 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 DXOO77932 396 aaKnown RBP13.97□□□□□ -0.17
LIMS1-202ENST00000338045 SNX4O95219 450 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 HIST1H2ABP04908 130 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 ADH6P28332 368 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 ARMC4Q5T2S8 1044 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 HIST3H2AQ7L7L0 130 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 NANOGP1Q8N7R0 232 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 OR52E2Q8NGJ4 325 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 HIST1H2ACQ93077 130 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 TMEM41AQ96HV5 264 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 THOC3Q96J01 351 aaKnown RBP13.97□□□□□ -0.17
LIMS1-202ENST00000338045 JAM3Q9BX67 310 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 NDEL1Q9GZM8 345 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 GPN2Q9H9Y4 310 aaPredicted RBP13.97□□□□□ -0.17
LIMS1-202ENST00000338045 CLEC2DQ9UHP7 191 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 ZFHX2Q9C0A1 2572 aaPredicted RBP13.97□□□□□ -0.17
LIMS1-202ENST00000338045 A0A087WZY1 265 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 SLC22A31A6NKX4 558 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 J3QRE1 110 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 EFNA2O43921 213 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 GABARAPO95166 117 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 IGHA1P01876 353 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 PAICSP22234 425 aaKnown RBP13.97□□□□□ -0.17
LIMS1-202ENST00000338045 TGFBR2P37173 567 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 CTXN1P60606 82 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 ERVK-25P63136 954 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.97□□□□□ -0.172e-6■□□□□ 11.2
LIMS1-202ENST00000338045 AIMP2Q13155 320 aaKnown RBP13.97□□□□□ -0.17
LIMS1-202ENST00000338045 MDGA2Q7Z553 956 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 ZNF227Q86WZ6 799 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 CYB561A3Q8NBI2 242 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 NPEPL1Q8NDH3 523 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 SDR9C7Q8NEX9 313 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 OR5J2Q8NH18 312 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 OR4K13Q8NH42 304 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 MFSD8Q8NHS3 518 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 OR5M11Q96RB7 305 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 BCL7BQ9BQE9 202 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 MND1Q9BWT6 205 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 POTEKPQ9BYX7 375 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 KLHL1Q9NR64 748 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 QPCTLQ9NXS2 382 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 HAO2Q9NYQ3 351 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 TAS2R5Q9NYW4 299 aa13.97□□□□□ -0.17
LIMS1-202ENST00000338045 FREM2Q5SZK8 3169 aa13.96□□□□□ -0.17
LIMS1-202ENST00000338045 FAM47E-STBD1D6RA91 191 aa13.96□□□□□ -0.17
LIMS1-202ENST00000338045 APOL3O95236 402 aa13.96□□□□□ -0.17
LIMS1-202ENST00000338045 PCSK6P29122 969 aa13.96□□□□□ -0.17
LIMS1-202ENST00000338045 SDHAP31040 664 aa13.96□□□□□ -0.17
LIMS1-202ENST00000338045 LIPAP38571 399 aa13.96□□□□□ -0.17
LIMS1-202ENST00000338045 EIF1P41567 113 aaKnown RBP13.96□□□□□ -0.17
LIMS1-202ENST00000338045 DOC2BQ14184 412 aa13.96□□□□□ -0.17
LIMS1-202ENST00000338045 TGIF1Q15583 401 aa13.96□□□□□ -0.17
LIMS1-202ENST00000338045 EMC4Q5J8M3 183 aa13.96□□□□□ -0.17
LIMS1-202ENST00000338045 BEST3Q8N1M1 668 aa13.96□□□□□ -0.17
LIMS1-202ENST00000338045 KIAA1143Q96AT1 154 aaPredicted RBP13.96□□□□□ -0.17
LIMS1-202ENST00000338045 OTULINQ96BN8 352 aa13.96□□□□□ -0.17
LIMS1-202ENST00000338045 ZBTB8AQ96BR9 441 aa13.96□□□□□ -0.17
LIMS1-202ENST00000338045 DDIT4LQ96D03 193 aa13.96□□□□□ -0.17
LIMS1-202ENST00000338045 ARL5BQ96KC2 179 aa13.96□□□□□ -0.17
LIMS1-202ENST00000338045 TEAD3Q99594 435 aa13.96□□□□□ -0.17
LIMS1-202ENST00000338045 RACGAP1Q9H0H5 632 aa13.96□□□□□ -0.17
LIMS1-202ENST00000338045 DLL3Q9NYJ7 618 aa13.96□□□□□ -0.17
LIMS1-202ENST00000338045 MRPL39Q9NYK5 338 aaKnown RBP13.96□□□□□ -0.17
LIMS1-202ENST00000338045 EXOSC1Q9Y3B2 195 aaKnown RBP13.96□□□□□ -0.17
LIMS1-202ENST00000338045 EML6Q6ZMW3 1958 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms