RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 HIST1H2ABP04908 130 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 ASAH2BP0C7U1 165 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 PIPP12273 146 aaPredicted RBP14.92□□□□□ -0.02
USP4-201ENST00000265560 PAICSP22234 425 aaKnown RBP14.92□□□□□ -0.02
USP4-201ENST00000265560 CDKN2AP42771 156 aaKnown RBP14.92□□□□□ -0.02
USP4-201ENST00000265560 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.92□□□□□ -0.02
USP4-201ENST00000265560 CHAF1BQ13112 559 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 SSX1Q16384 188 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 KLHL22Q53GT1 634 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 MEPCEQ7L2J0 689 aaKnown RBP14.92□□□□□ -0.02
USP4-201ENST00000265560 HIST3H2AQ7L7L0 130 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 NANOGP1Q8N7R0 232 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 OR6K6Q8NGW6 343 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 TM9SF4Q92544 642 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 HIST1H2ACQ93077 130 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 RFKQ969G6 155 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 OPALINQ96PE5 141 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 ZPBPQ9BS86 351 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 ISG20L2Q9H9L3 353 aaKnown RBP14.92□□□□□ -0.02
USP4-201ENST00000265560 SRA1Q9HD15 236 aaKnown RBP14.92□□□□□ -0.02
USP4-201ENST00000265560 EXOSC4Q9NPD3 245 aaKnown RBP14.92□□□□□ -0.02
USP4-201ENST00000265560 TNFRSF10DQ9UBN6 386 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 DIMT1Q9UNQ2 313 aaKnown RBP14.92□□□□□ -0.02
USP4-201ENST00000265560 ACACAQ13085 2346 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 A0A0G2JMM0 328 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 A0A1W2PPB8 328 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 A0A1W2PRS3 328 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 KIR3DP1A8MWS1 328 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 AIREO43918 545 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 LCN1P31025 176 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 PYCR1P32322 319 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 GABREP78334 506 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 SSPNQ14714 243 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 C1orf140Q5VVS0 124 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 RPL13AP3Q6NVV1 102 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 TTC9Q92623 222 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 RPRD1BQ9NQG5 326 aaKnown RBP14.92□□□□□ -0.02
USP4-201ENST00000265560 LSM2Q9Y333 95 aaKnown RBP14.92□□□□□ -0.02
USP4-201ENST00000265560 PHF3Q92576 2039 aaKnown RBP14.92□□□□□ -0.02
USP4-201ENST00000265560 C12orf71A8MTZ7 269 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 HLA-DOBP13765 273 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 HTR1FP30939 366 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 SFTPDP35247 375 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 CLK1P49759 484 aaKnown RBP14.92□□□□□ -0.02
USP4-201ENST00000265560 SSR4P51571 173 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 RAB40BQ12829 278 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 SNTA1Q13424 505 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 TOMM20Q15388 145 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 OR7A5Q15622 319 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 LEG1Q6P5S2 330 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 ESX1Q8N693 406 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 LSM14AQ8ND56 463 aaKnown RBP14.92□□□□□ -0.02
USP4-201ENST00000265560 KISS1RQ969F8 398 aaPredicted RBP14.92□□□□□ -0.02
USP4-201ENST00000265560 SPIN1Q9Y657 262 aaPredicted RBP14.92□□□□□ -0.02
USP4-201ENST00000265560 SVILO95425 2214 aa14.92□□□□□ -0.02
USP4-201ENST00000265560 ANKUB1A6NFN9 424 aa14.91□□□□□ -0.02
USP4-201ENST00000265560 SNTNA6NMZ2 147 aa14.91□□□□□ -0.02
USP4-201ENST00000265560 PSMD9O00233 223 aa14.91□□□□□ -0.02
USP4-201ENST00000265560 DCTN6O00399 190 aa14.91□□□□□ -0.02
USP4-201ENST00000265560 RAD1O60671 282 aa14.91□□□□□ -0.02
USP4-201ENST00000265560 RPS27P42677 84 aaKnown RBP14.91□□□□□ -0.02
USP4-201ENST00000265560 DNASE1L1P49184 302 aa14.91□□□□□ -0.02
USP4-201ENST00000265560 RPS4XP62701 263 aaKnown RBP14.91□□□□□ -0.02
USP4-201ENST00000265560 ZSCAN2Q7Z7L9 614 aaPredicted RBP14.91□□□□□ -0.02
USP4-201ENST00000265560 ZNF417Q8TAU3 575 aa14.91□□□□□ -0.02
USP4-201ENST00000265560 M1APQ8TC57 530 aa14.91□□□□□ -0.02
USP4-201ENST00000265560 THOC3Q96J01 351 aaKnown RBP14.91□□□□□ -0.02
USP4-201ENST00000265560 ZNF587Q96SQ5 575 aaPredicted RBP14.91□□□□□ -0.02
USP4-201ENST00000265560 RACGAP1Q9H0H5 632 aa14.91□□□□□ -0.02
USP4-201ENST00000265560 NRIP3Q9NQ35 241 aa14.91□□□□□ -0.02
USP4-201ENST00000265560 HPF1Q9NWY4 346 aa14.91□□□□□ -0.02
USP4-201ENST00000265560 CHCHD3Q9NX63 227 aaKnown RBP14.91□□□□□ -0.02
USP4-201ENST00000265560 TAS2R5Q9NYW4 299 aa14.91□□□□□ -0.02
USP4-201ENST00000265560 PCDHGA1Q9Y5H4 931 aa14.91□□□□□ -0.02
USP4-201ENST00000265560 A0A1W2PNR3 127 aa14.91□□□□□ -0.02
USP4-201ENST00000265560 RNF13O43567 381 aa14.91□□□□□ -0.02
USP4-201ENST00000265560 OC90Q02509 493 aaPredicted RBP14.91□□□□□ -0.02
USP4-201ENST00000265560 SLC19A3Q9BZV2 496 aa14.91□□□□□ -0.02
USP4-201ENST00000265560 APC2O95996 2303 aa14.91□□□□□ -0.02
USP4-201ENST00000265560 ATMQ13315 3056 aa14.91□□□□□ -0.02
USP4-201ENST00000265560 TRAV36DV7A0A075B6V5 113 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 GABARAPO95166 117 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 BCL10O95999 233 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 BGLAPP02818 100 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 NAGAP17050 411 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 ZNF41P51814 821 aaPredicted RBP14.9□□□□□ -0.02
USP4-201ENST00000265560 DPY19L2P2Q6ZN68 376 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 VASH2Q86V25 355 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 NPEPL1Q8NDH3 523 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 OR4K17Q8NGC6 315 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 FCGR1BQ92637 280 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 MND1Q9BWT6 205 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 MARCH7Q9H992 704 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 PIEZO2Q9H5I5 2752 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 SMIM30A4D0T7 59 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 A6NL46 340 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 MRPS14O60783 128 aaKnown RBP14.9□□□□□ -0.02
USP4-201ENST00000265560 SHC1P29353 583 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 MLF1P58340 268 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 INSL4Q14641 139 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms