RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 HHLA2Q9UM44 414 aa11.87□□□□□ -0.51
USP40-201ENST00000251722 CCL26Q9Y258 94 aa11.87□□□□□ -0.51
USP40-201ENST00000251722 COL18A1P39060 1754 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 TMEM72A0PK05 275 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 SERINC4A6NH21 518 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 ADH7P40394 386 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 GPR3P46089 330 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 LIPKQ5VXJ0 399 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 UBXN10Q96LJ8 280 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 GMPR2Q9P2T1 348 aaKnown RBP11.86□□□□□ -0.51
USP40-201ENST00000251722 F5H5P2 479 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 EEF1E1O43324 174 aaKnown RBP11.86□□□□□ -0.51
USP40-201ENST00000251722 HCRTR1O43613 425 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 MT-ATP6P00846 226 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 ETV4P43268 484 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 CXCR4P61073 352 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 GPR18Q14330 331 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 ELAVL1Q15717 326 aaKnown RBP11.86□□□□□ -0.51
USP40-201ENST00000251722 STEAP3Q658P3 488 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 CLEC9AQ6UXN8 241 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 WDR88Q6ZMY6 472 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 HIST2H3AQ71DI3 136 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 KCNE4Q8WWG9 221 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 BOD1Q96IK1 185 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 DPH1Q9BZG8 443 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 TEX10Q9NXF1 929 aaPredicted RBP11.86□□□□□ -0.51
USP40-201ENST00000251722 VAPAQ9P0L0 249 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 KLHL9Q9P2J3 617 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 VDAC3Q9Y277 283 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 KLF13Q9Y2Y9 288 aaPredicted RBP11.86□□□□□ -0.51
USP40-201ENST00000251722 YARS2Q9Y2Z4 477 aaKnown RBP11.86□□□□□ -0.51
USP40-201ENST00000251722 BOLA1Q9Y3E2 137 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 PCDHGA7Q9Y5G6 932 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 PMS2P1A4D2B8 440 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 GPRIN2O60269 458 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 F10P00742 488 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 SELEP16581 610 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 ENPP1P22413 925 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 CYB561P49447 251 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 LHX8Q68G74 356 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 OR13H1Q8NG92 308 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 ST7LQ8TDW4 575 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 SOX17Q9H6I2 414 aaPredicted RBP11.86□□□□□ -0.51
USP40-201ENST00000251722 A0A0D9SG52 128 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 C13orf42A0A1B0GVH6 325 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 CLDN24A6NM45 220 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 LDB3O75112 727 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 KCNK2O95069 426 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 DCNP07585 359 aaKnown RBP11.86□□□□□ -0.51
USP40-201ENST00000251722 SNRNP70P08621 437 aaKnown RBP11.86□□□□□ -0.51
USP40-201ENST00000251722 PRKXP51817 358 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 NDUFA6P56556 154 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 RANP62826 216 aaKnown RBP11.86□□□□□ -0.51
USP40-201ENST00000251722 OR1Q1Q15612 314 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 IER5LQ5T953 404 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 FCRLBQ6BAA4 426 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 PET117Q6UWS5 81 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 NETO1Q8TDF5 533 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 INPP5KQ9BT40 448 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 ELOVL3Q9HB03 270 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 TXNL4BQ9NX01 149 aaKnown RBP11.86□□□□□ -0.51
USP40-201ENST00000251722 B3GAT1Q9P2W7 334 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 H0YIG0 161 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 IGLV3-27P01718 113 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 KIAA0141Q14154 515 aaPredicted RBP11.86□□□□□ -0.51
USP40-201ENST00000251722 ZNF789Q5FWF6 425 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 CCNJQ5T5M9 372 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 MOB1BQ7L9L4 216 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 TMEM68Q96MH6 324 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 FBXL3Q9UKT7 428 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 IER3IP1Q9Y5U9 82 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 POMT1Q9Y6A1 747 aa11.86□□□□□ -0.51
USP40-201ENST00000251722 C2orf72A6NCS6 295 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 NME4O00746 187 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 TRHRP34981 398 aaPredicted RBP11.85□□□□□ -0.51
USP40-201ENST00000251722 MEF2DQ14814 521 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 SPCS2Q15005 226 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 ZNF534Q76KX8 674 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 NLGN4XQ8N0W4 816 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 CNEP1R1Q8N9A8 125 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 ZNF610Q8N9Z0 462 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 IFI44Q8TCB0 444 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 SLC41A2Q96JW4 573 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 A4GALTQ9NPC4 353 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 PTGDR2Q9Y5Y4 395 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 B4GAT1O43505 415 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 PLRG1O43660 514 aaKnown RBP11.85□□□□□ -0.51
USP40-201ENST00000251722 CSF1P09603 554 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 NRARPQ7Z6K4 114 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 CDH26Q8IXH8 852 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 DTX3Q8N9I9 347 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 CADM4Q8NFZ8 388 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 BTF3L4Q96K17 158 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 ALG8Q9BVK2 526 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 OLFM2O95897 454 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 BCL2A1Q16548 175 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 IL20RBQ6UXL0 311 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 KCTD9Q7L273 389 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 AAED1Q7RTV5 226 aa11.85□□□□□ -0.51
USP40-201ENST00000251722 BOLLQ8N9W6 283 aaKnown RBP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms