RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ABHD18Q0P651 414 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 PTGES3Q15185 160 aaKnown RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SDHAF4Q5VUM1 108 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 CDPF1Q6NVV7 123 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 OR5AR1Q8NGP9 310 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 TFGQ92734 400 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 PANX3Q96QZ0 392 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 MCRIP2Q9BUT9 160 aaKnown RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 MROQ9BYG7 248 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 ATG5Q9H1Y0 275 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 RPF2Q9H7B2 306 aaKnown RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 FBXO6Q9NRD1 293 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 PILRBQ9UKJ0 227 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 PTPN13Q12923 2485 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 PHF1O43189 567 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 MFSD11O43934 449 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 FAM20BO75063 409 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM132DQ14C87 1099 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ZBTB6Q15916 424 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 PPM1JQ5JR12 505 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 OR4K2Q8NGD2 314 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 OR14A16Q8NHC5 309 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM171Q8WVE6 324 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 DIRAS2Q96HU8 199 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 KIRREL1Q96J84 757 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ALG12Q9BV10 488 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 EGLN1Q9GZT9 426 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 TM7SF3Q9NS93 570 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF701Q9NV72 531 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 C1orf109Q9NX04 203 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 RPL26L1Q9UNX3 145 aaKnown RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF281Q9Y2X9 895 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 LRP5LA4QPB2 252 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 K7EN84 100 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 CD3EP07766 207 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ETFAP13804 333 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 KCNE1P15382 129 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 BCKDHBP21953 392 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 PNLIPRP1P54315 467 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 B3GNTL1Q67FW5 361 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 GLYATQ6IB77 296 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 NANOGP8Q6NSW7 305 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 NFKBIDQ8NI38 313 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ZDHHC19Q8WVZ1 309 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ARNTL2Q8WYA1 636 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 MRGPRX1Q96LB2 322 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 OMDQ99983 421 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ACTRT3Q9BYD9 372 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 TM6SF1Q9BZW5 370 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 IL26Q9NPH9 171 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 HACL1Q9UJ83 578 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 CCDC18Q5T9S5 1454 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 OR4C46A6NHA9 309 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 A8MVM7 634 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 RNASEK-C17orf49H0YIS7 233 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 AP4M1O00189 453 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 C8GP07360 202 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 S100A11P31949 105 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 PTGER3P43115 390 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 PRSS12P56730 875 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 TCTAP57738 103 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 IFITM2Q01629 132 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 DCAF12L1Q5VU92 463 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 OR52B4Q8NGK2 314 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ANKRD9Q96BM1 317 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 SDSLQ96GA7 329 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 OR52B2Q96RD2 323 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 IL22Q9GZX6 179 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 LRWD1Q9UFC0 647 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 TESQ9UGI8 421 aaKnown RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 FHOD3Q2V2M9 1422 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 TMPRSS11DO60235 418 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 UPK1BO75841 260 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ESR1P03372 595 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 SNRPBP14678 240 aaKnown RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 MYOGP15173 224 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 VEGFAP15692 232 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 PBX1P40424 430 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 MDH2P40926 338 aaKnown RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 RAB8AP61006 207 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 MRPS34P82930 218 aaKnown RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 PGM5Q15124 567 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 IQCJQ1A5X6 159 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 SNAI3Q3KNW1 292 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 BAP18Q8IXM2 172 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ADGRF3Q8IZF5 1079 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 LGI4Q8N135 537 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ENGASEQ8NFI3 743 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 OR13C9Q8NGT0 318 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 CNIH3Q8TBE1 160 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ZBED6CLQ96FA7 236 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 SLC46A2Q9BY10 475 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 TXNIPQ9H3M7 391 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 TAS2R8Q9NYW2 309 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF608Q9ULD9 1512 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 A0A1B0GV50 99 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 A0A1W2PRU2 124 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 F5H5K5 113 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 H3BMQ9 156 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 GFYI3L273 518 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms