RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 SLC35A2P78381 396 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 SRPXP78539 464 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 TPBGQ13641 420 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 ACTBL2Q562R1 376 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 IER5LQ5T953 404 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 CST9LP1Q5W188 147 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 KDM4DQ6B0I6 523 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 ASTLQ6HA08 431 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-217ENST00000637988 ADAMTSL4Q6UY14 1074 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 ELMOD3Q96FG2 381 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 KCNJ15Q99712 375 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 TMEM208Q9BTX3 173 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 EXTL2Q9UBQ6 330 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 CACFD1Q9UGQ2 172 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF443Q9Y2A4 671 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-217ENST00000637988 YARS2Q9Y2Z4 477 aaKnown RBP5.71□□□□□ -1.5
SCN1A-217ENST00000637988 MAST2Q6P0Q8 1798 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 PAPPA2Q9BXP8 1791 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 NFAT5O94916 1531 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF785A8K8V0 405 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF736B4DX44 427 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-217ENST00000637988 MASP2O00187 686 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 LY86O95711 162 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 BMP6P22004 513 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 DNASE1P24855 282 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 KEAP1Q14145 624 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 PODNL1Q6PEZ8 512 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 OR4F15Q8NGB8 312 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 SLC7A13Q8TCU3 470 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 C17orf50Q8WW18 174 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 GGHQ92820 318 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 CHFRQ96EP1 664 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF75AQ96N20 296 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 KCNA7Q96RP8 456 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 TPPP3Q9BW30 176 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 SGPP1Q9BX95 441 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 MAB21L2Q9Y586 359 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 ACOT8O14734 319 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 DIRAS1O95057 198 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 OR10J4P0C629 311 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 BDKRB2P30411 391 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 PRSS3P35030 304 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 PRLHRP49683 370 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 CCR5P51681 352 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 ERHP84090 104 aaKnown RBP5.71□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF574Q6ZN55 896 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-217ENST00000637988 PARS2Q7L3T8 475 aaKnown RBP5.71□□□□□ -1.5
SCN1A-217ENST00000637988 C4orf32Q8N8J7 132 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 FADS6Q8N9I5 356 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 LMNTD1Q8N9Z9 388 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 TMEM239Q8WW34 195 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 MUL1Q969V5 352 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 MAELQ96JY0 434 aaKnown RBP5.71□□□□□ -1.5
SCN1A-217ENST00000637988 ATP5SQ99766 215 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 NUDT22Q9BRQ3 303 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 SLC22A20A6NK97 555 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 SPP1P10451 314 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 ROR2Q01974 943 aaKnown RBP5.71□□□□□ -1.5
SCN1A-217ENST00000637988 RHDQ02161 417 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF813Q6ZN06 617 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 NRMQ8IXM6 262 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 STK35Q8TDR2 534 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 MIB2Q96AX9 1013 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 PTBP2Q9UKA9 531 aaKnown RBP5.71□□□□□ -1.5
SCN1A-217ENST00000637988 HHLA2Q9UM44 414 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 ATG4BQ9Y4P1 393 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 XKRY2A2RUG3 117 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 TRAF3IP2O43734 574 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-217ENST00000637988 OR7C1O76099 320 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-217ENST00000637988 H2AFB2P0C5Z0 115 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 BMP1P13497 986 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 RAB3BP20337 219 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 CSNK1DP48730 415 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 TMPRSS3P57727 454 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 TNFRSF17Q02223 184 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 SIX1Q15475 284 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-217ENST00000637988 PPP1R3AQ16821 1122 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 OR8J1Q8NGP2 316 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 DUSP19Q8WTR2 217 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 CDS1Q92903 461 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 BARX1Q9HBU1 254 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-217ENST00000637988 STUB1Q9UNE7 303 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 LRRC42Q9Y546 428 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 BET1O15155 118 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 GAAP10253 952 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 CD1DP15813 335 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 SERPINF1P36955 418 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 MAGEA6P43360 314 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 PTH2RP49190 550 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF133P52736 654 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-217ENST00000637988 CLDN8P56748 225 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 CD83Q01151 205 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 CNPY1Q3B7I2 92 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 HACD4Q5VWC8 232 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 KANK2Q63ZY3 851 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 SLC6A19Q695T7 634 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 CDC20BQ86Y33 519 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 UBTD1Q9HAC8 227 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 LIN7BQ9HAP6 207 aa5.7□□□□□ -1.5
SCN1A-217ENST00000637988 OR2S2Q9NQN1 319 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms