RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 CALB2P22676 271 aa16.27■□□□□ 0.2
CLN3-259ENST00000637551 POU4F3Q15319 338 aa16.27■□□□□ 0.2
CLN3-259ENST00000637551 SAMD4BQ5PRF9 694 aaKnown RBP16.27■□□□□ 0.2
CLN3-259ENST00000637551 LINC00114Q6XXX2 140 aa16.27■□□□□ 0.2
CLN3-259ENST00000637551 GALNT5Q7Z7M9 940 aa16.27■□□□□ 0.2
CLN3-259ENST00000637551 FITM2Q8N6M3 262 aa16.27■□□□□ 0.2
CLN3-259ENST00000637551 OR6T1Q8NGN1 323 aa16.27■□□□□ 0.2
CLN3-259ENST00000637551 ROBO4Q8WZ75 1007 aa16.27■□□□□ 0.2
CLN3-259ENST00000637551 DACH2Q96NX9 599 aa16.27■□□□□ 0.2
CLN3-259ENST00000637551 MCHR1Q99705 422 aa16.27■□□□□ 0.2
CLN3-259ENST00000637551 ING1Q9UK53 422 aaPredicted RBP16.27■□□□□ 0.2
CLN3-259ENST00000637551 B3GALT5Q9Y2C3 310 aa16.27■□□□□ 0.2
CLN3-259ENST00000637551 FREM1Q5H8C1 2179 aa16.27■□□□□ 0.19
CLN3-259ENST00000637551 TRAV36DV7A0A075B6V5 113 aa16.26■□□□□ 0.19
CLN3-259ENST00000637551 FTCDNL1E5RQL4 147 aa16.26■□□□□ 0.19
CLN3-259ENST00000637551 CXCR6O00574 342 aa16.26■□□□□ 0.19
CLN3-259ENST00000637551 TPST2O60704 377 aa16.26■□□□□ 0.19
CLN3-259ENST00000637551 MT-ATP6P00846 226 aa16.26■□□□□ 0.19
CLN3-259ENST00000637551 OPN1SWP03999 348 aa16.26■□□□□ 0.19
CLN3-259ENST00000637551 PSMB1P20618 241 aaKnown RBP16.26■□□□□ 0.19
CLN3-259ENST00000637551 UQCRC1P31930 480 aa16.26■□□□□ 0.19
CLN3-259ENST00000637551 OR3A2P47893 321 aa16.26■□□□□ 0.19
CLN3-259ENST00000637551 EGR4Q05215 589 aa16.26■□□□□ 0.19
CLN3-259ENST00000637551 P2RY6Q15077 328 aa16.26■□□□□ 0.19
CLN3-259ENST00000637551 CYBRD1Q53TN4 286 aa16.26■□□□□ 0.19
CLN3-259ENST00000637551 PPP4R4Q6NUP7 873 aa16.26■□□□□ 0.19
CLN3-259ENST00000637551 PLXDC2Q6UX71 529 aa16.26■□□□□ 0.19
CLN3-259ENST00000637551 SCAIQ8N9R8 606 aa16.26■□□□□ 0.19
CLN3-259ENST00000637551 ADAMTS16Q8TE57 1224 aa16.26■□□□□ 0.19
CLN3-259ENST00000637551 TMEM45BQ96B21 275 aa16.26■□□□□ 0.19
CLN3-259ENST00000637551 HDHD5Q9BXW7 423 aa16.26■□□□□ 0.19
CLN3-259ENST00000637551 C1orf21Q9H246 121 aa16.26■□□□□ 0.19
CLN3-259ENST00000637551 PARPBPQ9NWS1 579 aa16.26■□□□□ 0.19
CLN3-259ENST00000637551 RPS6KA6Q9UK32 745 aa16.26■□□□□ 0.19
CLN3-259ENST00000637551 RASD1Q9Y272 281 aa16.26■□□□□ 0.19
CLN3-259ENST00000637551 AKAP9Q99996 3911 aa16.26■□□□□ 0.19
CLN3-259ENST00000637551 DCHS2Q6V1P9 2916 aa16.25■□□□□ 0.19
CLN3-259ENST00000637551 ZC3H12DA2A288 527 aaKnown RBP16.25■□□□□ 0.19
CLN3-259ENST00000637551 TUBAL3A6NHL2 446 aa16.25■□□□□ 0.19
CLN3-259ENST00000637551 GMNNO75496 209 aa16.25■□□□□ 0.19
CLN3-259ENST00000637551 SMNDC1O75940 238 aaKnown RBP eCLIP16.25■□□□□ 0.19
CLN3-259ENST00000637551 OR5F1O95221 314 aa16.25■□□□□ 0.19
CLN3-259ENST00000637551 GGT1P19440 569 aa16.25■□□□□ 0.19
CLN3-259ENST00000637551 FPR1P21462 350 aa16.25■□□□□ 0.19
CLN3-259ENST00000637551 IFNA8P32881 189 aa16.25■□□□□ 0.19
CLN3-259ENST00000637551 RBM34P42696 430 aaKnown RBP16.25■□□□□ 0.19
CLN3-259ENST00000637551 KIR2DL3P43628 341 aa16.25■□□□□ 0.19
CLN3-259ENST00000637551 OR2B6P58173 313 aa16.25■□□□□ 0.19
CLN3-259ENST00000637551 SIRPAP78324 504 aa16.25■□□□□ 0.19
CLN3-259ENST00000637551 SLC17A1Q14916 467 aa16.25■□□□□ 0.19
CLN3-259ENST00000637551 DAZAP2Q15038 168 aaPredicted RBP16.25■□□□□ 0.19
CLN3-259ENST00000637551 NPTX1Q15818 432 aa16.25■□□□□ 0.19
CLN3-259ENST00000637551 ENTPD8Q5MY95 495 aa16.25■□□□□ 0.19
CLN3-259ENST00000637551 ZNF474Q6S9Z5 364 aaPredicted RBP16.25■□□□□ 0.19
CLN3-259ENST00000637551 TFAP2EQ6VUC0 442 aa16.25■□□□□ 0.19
CLN3-259ENST00000637551 CBLL1Q75N03 491 aa16.25■□□□□ 0.19
CLN3-259ENST00000637551 TUSC5Q8IXB3 177 aa16.25■□□□□ 0.19
CLN3-259ENST00000637551 GEMIN6Q8WXD5 167 aaKnown RBP16.25■□□□□ 0.19
CLN3-259ENST00000637551 PTDSS2Q9BVG9 487 aa16.25■□□□□ 0.19
CLN3-259ENST00000637551 GORASP2Q9H8Y8 452 aa16.25■□□□□ 0.19
CLN3-259ENST00000637551 ARL8BQ9NVJ2 186 aa16.25■□□□□ 0.19
CLN3-259ENST00000637551 NDRG3Q9UGV2 375 aa16.25■□□□□ 0.19
CLN3-259ENST00000637551 MAGEL2Q9UJ55 1249 aa16.25■□□□□ 0.19
CLN3-259ENST00000637551 ABCA4P78363 2273 aa16.25■□□□□ 0.19
CLN3-259ENST00000637551 OR6C65A6NJZ3 312 aa16.24■□□□□ 0.19
CLN3-259ENST00000637551 C16orf97H3BN30 126 aa16.24■□□□□ 0.19
CLN3-259ENST00000637551 M0R3H8 397 aa16.24■□□□□ 0.19
CLN3-259ENST00000637551 GSTA4O15217 222 aa16.24■□□□□ 0.19
CLN3-259ENST00000637551 POU2F1P14859 743 aa16.24■□□□□ 0.19
CLN3-259ENST00000637551 CDH12P55289 794 aa16.24■□□□□ 0.19
CLN3-259ENST00000637551 HOXC5Q00444 222 aa16.24■□□□□ 0.19
CLN3-259ENST00000637551 CEACAM7Q14002 265 aa16.24■□□□□ 0.19
CLN3-259ENST00000637551 LRRC23Q53EV4 343 aaPredicted RBP16.24■□□□□ 0.19
CLN3-259ENST00000637551 Q6ZT83 130 aa16.24■□□□□ 0.19
CLN3-259ENST00000637551 LUZP2Q86TE4 346 aa16.24■□□□□ 0.19
CLN3-259ENST00000637551 CARM1Q86X55 608 aa16.24■□□□□ 0.19
CLN3-259ENST00000637551 BCAS4Q8TDM0 211 aa16.24■□□□□ 0.19
CLN3-259ENST00000637551 SLC41A3Q96GZ6 507 aa16.24■□□□□ 0.19
CLN3-259ENST00000637551 NSL1Q96IY1 281 aa16.24■□□□□ 0.19
CLN3-259ENST00000637551 MUC13Q9H3R2 512 aa16.24■□□□□ 0.19
CLN3-259ENST00000637551 SAMD4AQ9UPU9 718 aaKnown RBP16.24■□□□□ 0.19
CLN3-259ENST00000637551 GPR52Q9Y2T5 361 aa16.24■□□□□ 0.19
CLN3-259ENST00000637551 IGKV1D-42A0A075B6H8 117 aa16.23■□□□□ 0.19
CLN3-259ENST00000637551 FAM221AA4D161 298 aa16.23■□□□□ 0.19
CLN3-259ENST00000637551 EPXP11678 715 aa16.23■□□□□ 0.19
CLN3-259ENST00000637551 GTF2E2P29084 291 aaKnown RBP16.23■□□□□ 0.19
CLN3-259ENST00000637551 UGT2B10P36537 528 aa16.23■□□□□ 0.19
CLN3-259ENST00000637551 BNIP2Q12982 314 aa16.23■□□□□ 0.19
CLN3-259ENST00000637551 OR7A5Q15622 319 aa16.23■□□□□ 0.19
CLN3-259ENST00000637551 OTUD3Q5T2D3 398 aaPredicted RBP16.23■□□□□ 0.19
CLN3-259ENST00000637551 GABRG1Q8N1C3 465 aa16.23■□□□□ 0.19
CLN3-259ENST00000637551 PRRC1Q96M27 445 aa16.23■□□□□ 0.19
CLN3-259ENST00000637551 HS6ST2Q96MM7 605 aa16.23■□□□□ 0.19
CLN3-259ENST00000637551 KLHL4Q9C0H6 718 aa16.23■□□□□ 0.19
CLN3-259ENST00000637551 OPN3Q9H1Y3 402 aaPredicted RBP16.23■□□□□ 0.19
CLN3-259ENST00000637551 ANKRD19PQ9H560 264 aa16.23■□□□□ 0.19
CLN3-259ENST00000637551 MCCC2Q9HCC0 563 aa16.23■□□□□ 0.19
CLN3-259ENST00000637551 MALT1Q9UDY8 824 aa16.23■□□□□ 0.19
CLN3-259ENST00000637551 CD300AQ9UGN4 299 aa16.23■□□□□ 0.19
CLN3-259ENST00000637551 SH3GLB1Q9Y371 365 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms