RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 FAM173AQ9BQD7 235 aa16.63■□□□□ 0.25
CLN3-254ENST00000637050 DKKL1Q9UK85 242 aa16.63■□□□□ 0.25
CLN3-254ENST00000637050 MPDZO75970 2070 aa16.63■□□□□ 0.25
CLN3-254ENST00000637050 PINLYPA6NC86 204 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 MCIDASD6RGH6 385 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 ENTPD6O75354 484 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 PPP1R3DO95685 299 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 HIST1H2ABP04908 130 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 PEPDP12955 493 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 EEF1B2P24534 225 aaKnown RBP16.62■□□□□ 0.25
CLN3-254ENST00000637050 FKBP2P26885 142 aaKnown RBP16.62■□□□□ 0.25
CLN3-254ENST00000637050 SRD5A2P31213 254 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 CCL11P51671 97 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 MLLT10P55197 1068 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 FOXK2Q01167 660 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 SELENBP1Q13228 472 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.62■□□□□ 0.25
CLN3-254ENST00000637050 DEFB109BQ30KR1 87 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 GLYR1Q49A26 553 aaPredicted RBP16.62■□□□□ 0.25
CLN3-254ENST00000637050 SYT14P1Q58G82 188 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 MEDAGQ5VYS4 303 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 ZNF773Q6PK81 442 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 DPY19L2P2Q6ZN68 376 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 HIST3H2AQ7L7L0 130 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 NANOGNBQ7Z5D8 188 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 LRRC75AQ8NAA5 344 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 OR2M7Q8NG81 312 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 OR5M1Q8NGP8 315 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 MOSPD2Q8NHP6 518 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 HIST1H2ACQ93077 130 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 ZFP64Q9NPA5 681 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 BATF3Q9NR55 127 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 PSORS1C1Q9UIG5 152 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 SSUH2Q9Y2M2 353 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 SPIN1Q9Y657 262 aaPredicted RBP16.62■□□□□ 0.25
CLN3-254ENST00000637050 PTGES3LE9PB15 166 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 BLOC1S5-TXNDC5H3BN57 136 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 FZD7O75084 574 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 TFAP2AP05549 437 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 HTR1AP08908 422 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 ZNF17P17021 662 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 TCEA1P23193 301 aaKnown RBP16.62■□□□□ 0.25
CLN3-254ENST00000637050 AQP2P41181 271 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 NUDT6P53370 316 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 SGCBQ16585 318 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 ZNF540Q8NDQ6 660 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 FDCSPQ8NFU4 85 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 MFSD8Q8NHS3 518 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 SLC25A43Q8WUT9 341 aaPredicted RBP16.62■□□□□ 0.25
CLN3-254ENST00000637050 IPCEF1Q8WWN9 437 aaPredicted RBP16.62■□□□□ 0.25
CLN3-254ENST00000637050 SLC25A36Q96CQ1 311 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 DNAJA3Q96EY1 480 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 PLEKHA8Q96JA3 519 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 LRR1Q96L50 414 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 UBL7Q96S82 380 aaPredicted RBP16.62■□□□□ 0.25
CLN3-254ENST00000637050 RHNO1Q9BSD3 238 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 NRIP3Q9NQ35 241 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 CMC2Q9NRP2 79 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 FKBP14Q9NWM8 211 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 DNAJC27Q9NZQ0 273 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 BOKQ9UMX3 212 aaPredicted RBP16.62■□□□□ 0.25
CLN3-254ENST00000637050 GPR52Q9Y2T5 361 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 MRPS18CQ9Y3D5 142 aaKnown RBP16.62■□□□□ 0.25
CLN3-254ENST00000637050 KCNMB2Q9Y691 235 aa16.62■□□□□ 0.25
CLN3-254ENST00000637050 CLCA1A8K7I4 914 aa16.61■□□□□ 0.25
CLN3-254ENST00000637050 CEACAM4O75871 244 aa16.61■□□□□ 0.25
CLN3-254ENST00000637050 SLC2A10O95528 541 aa16.61■□□□□ 0.25
CLN3-254ENST00000637050 SP1P08047 785 aa16.61■□□□□ 0.25
CLN3-254ENST00000637050 RFPL3SP0C7P2 107 aa16.61■□□□□ 0.25
CLN3-254ENST00000637050 RPL4P36578 427 aaKnown RBP16.61■□□□□ 0.25
CLN3-254ENST00000637050 RPL18Q07020 188 aaKnown RBP16.61■□□□□ 0.25
CLN3-254ENST00000637050 MFSD13AQ14CX5 517 aa16.61■□□□□ 0.25
CLN3-254ENST00000637050 ZNF362Q5T0B9 420 aaPredicted RBP16.61■□□□□ 0.25
CLN3-254ENST00000637050 SLC6A19Q695T7 634 aa16.61■□□□□ 0.25
CLN3-254ENST00000637050 BCDIN3DQ7Z5W3 292 aaKnown RBP16.61■□□□□ 0.25
CLN3-254ENST00000637050 IGFN1Q86VF2 1251 aa16.61■□□□□ 0.25
CLN3-254ENST00000637050 SULF2Q8IWU5 870 aa16.61■□□□□ 0.25
CLN3-254ENST00000637050 ATP6V1C2Q8NEY4 427 aa16.61■□□□□ 0.25
CLN3-254ENST00000637050 OR5J2Q8NH18 312 aa16.61■□□□□ 0.25
CLN3-254ENST00000637050 GGHQ92820 318 aa16.61■□□□□ 0.25
CLN3-254ENST00000637050 ZNF582Q96NG8 517 aaPredicted RBP16.61■□□□□ 0.25
CLN3-254ENST00000637050 HES7Q9BYE0 225 aa16.61■□□□□ 0.25
CLN3-254ENST00000637050 FN3KQ9H479 309 aa16.61■□□□□ 0.25
CLN3-254ENST00000637050 AMBNQ9NP70 447 aa16.61■□□□□ 0.25
CLN3-254ENST00000637050 CCNB1IP1Q9NPC3 277 aa16.61■□□□□ 0.25
CLN3-254ENST00000637050 RPH3AQ9Y2J0 694 aaPredicted RBP16.61■□□□□ 0.25
CLN3-254ENST00000637050 KDM4EB2RXH2 506 aaPredicted RBP16.6■□□□□ 0.25
CLN3-254ENST00000637050 H3BML4 177 aa16.6■□□□□ 0.25
CLN3-254ENST00000637050 ARPC3O15145 178 aa16.6■□□□□ 0.25
CLN3-254ENST00000637050 NME2P1O60361 137 aa16.6■□□□□ 0.25
CLN3-254ENST00000637050 TFPIP10646 304 aa16.6■□□□□ 0.25
CLN3-254ENST00000637050 IMPDH2P12268 514 aa16.6■□□□□ 0.25
CLN3-254ENST00000637050 NME2P22392 152 aa16.6■□□□□ 0.25
CLN3-254ENST00000637050 GRPRP30550 384 aa16.6■□□□□ 0.25
CLN3-254ENST00000637050 IDUAP35475 653 aa16.6■□□□□ 0.25
CLN3-254ENST00000637050 CLK1P49759 484 aaKnown RBP16.6■□□□□ 0.25
CLN3-254ENST00000637050 C11orf91Q3C1V1 193 aa16.6■□□□□ 0.25
CLN3-254ENST00000637050 ALG10Q5BKT4 473 aa16.6■□□□□ 0.25
CLN3-254ENST00000637050 SLC35F1Q5T1Q4 408 aa16.6■□□□□ 0.25
CLN3-254ENST00000637050 SLC25A25Q6KCM7 469 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms