RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 RPL4P36578 427 aaKnown RBP18.13■□□□□ 0.49
CLN3-250ENST00000636839 ERVK-25P63136 954 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 RPL18Q07020 188 aaKnown RBP18.13■□□□□ 0.49
CLN3-250ENST00000636839 GLYR1Q49A26 553 aaPredicted RBP18.13■□□□□ 0.49
CLN3-250ENST00000636839 SYT14P1Q58G82 188 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 AHSA2Q719I0 299 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 YRDCQ86U90 279 aaKnown RBP18.13■□□□□ 0.49
CLN3-250ENST00000636839 ZNF540Q8NDQ6 660 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 GGHQ92820 318 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 DKKL1Q9UK85 242 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 IER3IP1Q9Y5U9 82 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 A0A1W2PNR3 127 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 IMPA2O14732 288 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 GRPRP30550 384 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 SFTPDP35247 375 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 DSCR4P56555 118 aaPredicted RBP18.13■□□□□ 0.49
CLN3-250ENST00000636839 CXCR4P61073 352 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 SLC35A2P78381 396 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 FAM69AQ5T7M9 428 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 GHDCQ8N2G8 530 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 KDM8Q8N371 416 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 FAM26EQ8N5C1 309 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 LRRC75AQ8NAA5 344 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 MDS2Q8NDY4 140 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 OR2M7Q8NG81 312 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 TMEM163Q8TC26 289 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 STK35Q8TDR2 534 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 TRUB1Q8WWH5 349 aaKnown RBP18.13■□□□□ 0.49
CLN3-250ENST00000636839 ZNF582Q96NG8 517 aaPredicted RBP18.13■□□□□ 0.49
CLN3-250ENST00000636839 ERMAPQ96PL5 475 aaPredicted RBP18.13■□□□□ 0.49
CLN3-250ENST00000636839 SLC38A2Q96QD8 506 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 HCAR1Q9BXC0 346 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 MRPS26Q9BYN8 205 aaKnown RBP18.13■□□□□ 0.49
CLN3-250ENST00000636839 CLN6Q9NWW5 311 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 TAS2R5Q9NYW4 299 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 HIF3AQ9Y2N7 669 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 KCNMB2Q9Y691 235 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 FTCDNL1E5RQL4 147 aa18.12■□□□□ 0.49
CLN3-250ENST00000636839 SLC6A6P31641 620 aa18.12■□□□□ 0.49
CLN3-250ENST00000636839 UQCRC1P31930 480 aa18.12■□□□□ 0.49
CLN3-250ENST00000636839 OR7A5Q15622 319 aa18.12■□□□□ 0.49
CLN3-250ENST00000636839 RAET1LQ5VY80 246 aa18.12■□□□□ 0.49
CLN3-250ENST00000636839 RPL13AP3Q6NVV1 102 aa18.12■□□□□ 0.49
CLN3-250ENST00000636839 GTPBP8Q8N3Z3 284 aaPredicted RBP18.12■□□□□ 0.49
CLN3-250ENST00000636839 CYB561A3Q8NBI2 242 aa18.12■□□□□ 0.49
CLN3-250ENST00000636839 ZNF248Q8NDW4 579 aa18.12■□□□□ 0.49
CLN3-250ENST00000636839 OTULINQ96BN8 352 aa18.12■□□□□ 0.49
CLN3-250ENST00000636839 DUSP21Q9H596 190 aa18.12■□□□□ 0.49
CLN3-250ENST00000636839 FKRPQ9H9S5 495 aa18.12■□□□□ 0.49
CLN3-250ENST00000636839 HINT3Q9NQE9 182 aaKnown RBP18.12■□□□□ 0.49
CLN3-250ENST00000636839 PSORS1C1Q9UIG5 152 aa18.12■□□□□ 0.49
CLN3-250ENST00000636839 ZNF229Q9UJW7 825 aa18.12■□□□□ 0.49
CLN3-250ENST00000636839 MSRB2Q9Y3D2 182 aa18.12■□□□□ 0.49
CLN3-250ENST00000636839 PCDHGB6Q9Y5F9 930 aa18.12■□□□□ 0.49
CLN3-250ENST00000636839 OR2M5A3KFT3 312 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 OR5H15A6NDH6 313 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 FAM47E-STBD1D6RA91 191 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 M0R082 166 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 MPZL2O60487 215 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 AHSA1O95433 338 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 C21orf33P30042 268 aaPredicted RBP18.11■□□□□ 0.49
CLN3-250ENST00000636839 MYBPHQ13203 477 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 MFAP5Q13361 173 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 TOP3AQ13472 1001 aaPredicted RBP18.11■□□□□ 0.49
CLN3-250ENST00000636839 TMEM44Q2T9K0 475 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 TMEM176BQ3YBM2 270 aaPredicted RBP18.11■□□□□ 0.49
CLN3-250ENST00000636839 B3GLCTQ6Y288 498 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 GALNTL5Q7Z4T8 443 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 NANOGNBQ7Z5D8 188 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 CPOQ8IVL8 374 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 ZNF417Q8TAU3 575 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 ZNF587Q96SQ5 575 aaPredicted RBP18.11■□□□□ 0.49
CLN3-250ENST00000636839 KATNB1Q9BVA0 655 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 CCDC90BQ9GZT6 254 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 ZFP64Q9NPA5 681 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 ALPK2Q86TB3 2170 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 PIEZO1Q92508 2521 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 C11orf98E9PRG8 122 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 ZNF208O43345 1280 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 TRAPPC6AO75865 159 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 HIST1H1CP16403 213 aaKnown RBP18.11■□□□□ 0.49
CLN3-250ENST00000636839 TMEM201Q5SNT2 666 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 PLBD1Q6P4A8 553 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 ZNF773Q6PK81 442 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 OR4K13Q8NH42 304 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 TMIGD2Q96BF3 282 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 ZBTB8AQ96BR9 441 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 RASD2Q96D21 266 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 PLEKHA8Q96JA3 519 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 TAPBPLQ9BX59 468 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP18.11■□□□□ 0.49
CLN3-250ENST00000636839 SCN3BQ9NY72 215 aa18.11■□□□□ 0.49
CLN3-250ENST00000636839 A0A087WXM4 84 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 SERPINI2O75830 405 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 APOL3O95236 402 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 HIST1H2ABP04908 130 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 HMGN1P05114 100 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 SP1P08047 785 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 CELA3AP09093 270 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 KLK2P20151 261 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms