RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 SDHAP31040 664 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 CAPZA2P47755 286 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 MTNR1AP48039 350 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 CYB561P49447 251 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 ST13P50502 369 aaKnown RBP9.58□□□□□ -0.88
CLN3-248ENST00000636355 CDH11P55287 796 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 DSCR4P56555 118 aaPredicted RBP9.58□□□□□ -0.88
CLN3-248ENST00000636355 EMX1Q04741 257 aaPredicted RBP9.58□□□□□ -0.88
CLN3-248ENST00000636355 ST3GAL4Q11206 333 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 FOXF1Q12946 379 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 RAB39AQ14964 217 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 TOMM34Q15785 309 aaPredicted RBP9.58□□□□□ -0.88
CLN3-248ENST00000636355 NEDD8Q15843 81 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 LCN1P1Q5VSP4 162 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 ABHD17BQ5VST6 288 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 AADACL4Q5VUY2 407 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 FAM205BPQ63HN1 556 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 NIPAL3Q6P499 406 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 IL20RBQ6UXL0 311 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 THSD4Q6ZMP0 1018 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 HIST3H2AQ7L7L0 130 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 CXXC5Q7LFL8 322 aaKnown RBP9.58□□□□□ -0.88
CLN3-248ENST00000636355 ZNF367Q7RTV3 350 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 ADGRG3Q86Y34 549 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 GTPBP8Q8N3Z3 284 aaPredicted RBP9.58□□□□□ -0.88
CLN3-248ENST00000636355 OR5J2Q8NH18 312 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 PSMF1Q92530 271 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 HIST1H2ACQ93077 130 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 UBE2FQ969M7 185 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 DOK1Q99704 481 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 PTDSS2Q9BVG9 487 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 ASPNQ9BXN1 380 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 CCDC90BQ9GZT6 254 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 FGF20Q9NP95 211 aaPredicted RBP9.58□□□□□ -0.88
CLN3-248ENST00000636355 FANCFQ9NPI8 374 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 INPP5EQ9NRR6 644 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 MRPL39Q9NYK5 338 aaKnown RBP9.58□□□□□ -0.88
CLN3-248ENST00000636355 GPR83Q9NYM4 423 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 HAO2Q9NYQ3 351 aa9.58□□□□□ -0.88
CLN3-248ENST00000636355 MRPS18CQ9Y3D5 142 aaKnown RBP9.58□□□□□ -0.88
CLN3-248ENST00000636355 TMEM72A0PK05 275 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 ZNF99A8MXY4 864 aaPredicted RBP9.57□□□□□ -0.88
CLN3-248ENST00000636355 FTCDNL1E5RQL4 147 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 PRR23D1E9PI22 279 aaPredicted RBP9.57□□□□□ -0.88
CLN3-248ENST00000636355 SEC14L5O43304 696 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 TRIM3O75382 744 aaPredicted RBP9.57□□□□□ -0.88
CLN3-248ENST00000636355 PPP1R3DO95685 299 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 FADS2O95864 444 aaKnown RBP9.57□□□□□ -0.88
CLN3-248ENST00000636355 PRR23D2P0DMB1 279 aaPredicted RBP9.57□□□□□ -0.88
CLN3-248ENST00000636355 CCL3P10147 92 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 MYL12AP19105 171 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 ACVR2AP27037 513 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 IDUAP35475 653 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 MASP1P48740 699 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 NUDT6P53370 316 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 TMBIM6P55061 237 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 C1DQ13901 141 aaKnown RBP9.57□□□□□ -0.88
CLN3-248ENST00000636355 ALG10Q5BKT4 473 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 SLC35D3Q5M8T2 416 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 FOXB2Q5VYV0 432 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 BICRALQ6AI39 1079 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 TIGD3Q6B0B8 471 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 CCDC81Q6ZN84 652 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 FAM122BQ7Z309 247 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 HDDC2Q7Z4H3 204 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 MEX3DQ86XN8 651 aaKnown RBP9.57□□□□□ -0.88
CLN3-248ENST00000636355 WDSUB1Q8N9V3 476 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 PSD4Q8NDX1 1056 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 OR51A7Q8NH64 312 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 RAB2BQ8WUD1 216 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 FAR1Q8WVX9 515 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 TAAR8Q969N4 342 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 KTI12Q96EK9 354 aaPredicted RBP9.57□□□□□ -0.88
CLN3-248ENST00000636355 TMEM80Q96HE8 168 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 THOC3Q96J01 351 aaKnown RBP9.57□□□□□ -0.88
CLN3-248ENST00000636355 TNFRSF13CQ96RJ3 184 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 MYCBPQ99417 103 aaPredicted RBP9.57□□□□□ -0.88
CLN3-248ENST00000636355 MND1Q9BWT6 205 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 TIMMDC1Q9NPL8 285 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 HINT3Q9NQE9 182 aaKnown RBP9.57□□□□□ -0.88
CLN3-248ENST00000636355 ALKBH4Q9NXW9 302 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 MED11Q9P086 117 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 H2AFY2Q9P0M6 372 aaPredicted RBP9.57□□□□□ -0.88
CLN3-248ENST00000636355 ERVK-18Q9QC07 812 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 RSL24D1Q9UHA3 163 aaKnown RBP9.57□□□□□ -0.88
CLN3-248ENST00000636355 BOKQ9UMX3 212 aaPredicted RBP9.57□□□□□ -0.88
CLN3-248ENST00000636355 EXOSC1Q9Y3B2 195 aaKnown RBP9.57□□□□□ -0.88
CLN3-248ENST00000636355 HDGFL3Q9Y3E1 203 aa9.57□□□□□ -0.88
CLN3-248ENST00000636355 A0A1W2PNV4 684 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 TMEM129A0AVI4 362 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 GJE1A6NN92 205 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 MCIDASD6RGH6 385 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 LINC01387J3KSC0 135 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 GNB5O14775 395 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 DNPH1O43598 174 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 CBR3O75828 277 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 IGHA1P01876 353 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 ADORA3P0DMS8 318 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 PTNP21246 168 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 ITGA3P26006 1051 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms