RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 FITM2Q8N6M3 262 aa18.41■□□□□ 0.54
CLN3-240ENST00000631023 TPD52L3Q96J77 140 aa18.41■□□□□ 0.54
CLN3-240ENST00000631023 ZNF300Q96RE9 604 aaPredicted RBP18.41■□□□□ 0.54
CLN3-240ENST00000631023 EPYCQ99645 322 aa18.41■□□□□ 0.54
CLN3-240ENST00000631023 PCDHAC1Q9H158 963 aa18.41■□□□□ 0.54
CLN3-240ENST00000631023 CPSF4LA6NMK7 179 aaKnown RBP18.4■□□□□ 0.54
CLN3-240ENST00000631023 ZNF716A6NP11 495 aa18.4■□□□□ 0.54
CLN3-240ENST00000631023 EPXP11678 715 aa18.4■□□□□ 0.54
CLN3-240ENST00000631023 GTF2E2P29084 291 aaKnown RBP18.4■□□□□ 0.54
CLN3-240ENST00000631023 UGT2B10P36537 528 aa18.4■□□□□ 0.54
CLN3-240ENST00000631023 MXRA7P84157 204 aa18.4■□□□□ 0.54
CLN3-240ENST00000631023 TLE4Q04727 773 aa18.4■□□□□ 0.54
CLN3-240ENST00000631023 NPTX1Q15818 432 aa18.4■□□□□ 0.54
CLN3-240ENST00000631023 TMEM225Q6GV28 225 aa18.4■□□□□ 0.54
CLN3-240ENST00000631023 RBM45Q8IUH3 476 aaKnown RBP18.4■□□□□ 0.54
CLN3-240ENST00000631023 OR4D11Q8NGI4 311 aa18.4■□□□□ 0.54
CLN3-240ENST00000631023 LINC01560Q8TB33 94 aa18.4■□□□□ 0.54
CLN3-240ENST00000631023 ADAMTS16Q8TE57 1224 aa18.4■□□□□ 0.54
CLN3-240ENST00000631023 ZNF775Q96BV0 537 aaPredicted RBP18.4■□□□□ 0.54
CLN3-240ENST00000631023 SLC25A36Q96CQ1 311 aa18.4■□□□□ 0.54
CLN3-240ENST00000631023 NOSIPQ9Y314 301 aaKnown RBP18.4■□□□□ 0.54
CLN3-240ENST00000631023 APCP25054 2843 aa18.4■□□□□ 0.54
CLN3-240ENST00000631023 TRAPPC13A5PLN9 417 aa18.39■□□□□ 0.53
CLN3-240ENST00000631023 AQP7P3A6NL99 342 aa18.39■□□□□ 0.53
CLN3-240ENST00000631023 ZNF814B7Z6K7 855 aa18.39■□□□□ 0.53
CLN3-240ENST00000631023 CHP2O43745 196 aa18.39■□□□□ 0.53
CLN3-240ENST00000631023 GMNNO75496 209 aa18.39■□□□□ 0.53
CLN3-240ENST00000631023 AKR7A3O95154 331 aa18.39■□□□□ 0.53
CLN3-240ENST00000631023 FAM69AQ5T7M9 428 aa18.39■□□□□ 0.53
CLN3-240ENST00000631023 C16orf89Q6UX73 402 aa18.39■□□□□ 0.53
CLN3-240ENST00000631023 TFAP2EQ6VUC0 442 aa18.39■□□□□ 0.53
CLN3-240ENST00000631023 ZNF100Q8IYN0 542 aa18.39■□□□□ 0.53
CLN3-240ENST00000631023 PGAM4Q8N0Y7 254 aa18.39■□□□□ 0.53
CLN3-240ENST00000631023 TMEM99Q8N816 258 aa18.39■□□□□ 0.53
CLN3-240ENST00000631023 KTI12Q96EK9 354 aaPredicted RBP18.39■□□□□ 0.53
CLN3-240ENST00000631023 DACH2Q96NX9 599 aa18.39■□□□□ 0.53
CLN3-240ENST00000631023 TMEM43Q9BTV4 400 aa18.39■□□□□ 0.53
CLN3-240ENST00000631023 SF3B5Q9BWJ5 86 aaKnown RBP18.39■□□□□ 0.53
CLN3-240ENST00000631023 KLHL4Q9C0H6 718 aa18.39■□□□□ 0.53
CLN3-240ENST00000631023 GMPR2Q9P2T1 348 aaKnown RBP18.39■□□□□ 0.53
CLN3-240ENST00000631023 TRAV36DV7A0A075B6V5 113 aa18.38■□□□□ 0.53
CLN3-240ENST00000631023 SH3D21A4FU49 640 aa18.38■□□□□ 0.53
CLN3-240ENST00000631023 CYSRT1A8MQ03 144 aa18.38■□□□□ 0.53
CLN3-240ENST00000631023 VAMP5O95183 116 aa18.38■□□□□ 0.53
CLN3-240ENST00000631023 OR3A2P47893 321 aa18.38■□□□□ 0.53
CLN3-240ENST00000631023 MFSD13AQ14CX5 517 aa18.38■□□□□ 0.53
CLN3-240ENST00000631023 BCAS4Q8TDM0 211 aa18.38■□□□□ 0.53
CLN3-240ENST00000631023 NSL1Q96IY1 281 aa18.38■□□□□ 0.53
CLN3-240ENST00000631023 MPP4Q96JB8 637 aa18.38■□□□□ 0.53
CLN3-240ENST00000631023 POLR2J2Q9GZM3 115 aaKnown RBP18.38■□□□□ 0.53
CLN3-240ENST00000631023 POLR2J3Q9H1A7 115 aaKnown RBP18.38■□□□□ 0.53
CLN3-240ENST00000631023 MCCC2Q9HCC0 563 aa18.38■□□□□ 0.53
CLN3-240ENST00000631023 PARPBPQ9NWS1 579 aa18.38■□□□□ 0.53
CLN3-240ENST00000631023 CASKO14936 926 aa18.38■□□□□ 0.53
CLN3-240ENST00000631023 RAMP1O60894 148 aa18.38■□□□□ 0.53
CLN3-240ENST00000631023 MRPL33O75394 65 aaKnown RBP18.38■□□□□ 0.53
CLN3-240ENST00000631023 SLC17A1Q14916 467 aa18.38■□□□□ 0.53
CLN3-240ENST00000631023 LSRQ86X29 649 aaPredicted RBP18.38■□□□□ 0.53
CLN3-240ENST00000631023 OR6S1Q8NH40 331 aa18.38■□□□□ 0.53
CLN3-240ENST00000631023 TAAR8Q969N4 342 aa18.38■□□□□ 0.53
CLN3-240ENST00000631023 FAM162AQ96A26 154 aa18.38■□□□□ 0.53
CLN3-240ENST00000631023 PTDSS2Q9BVG9 487 aa18.38■□□□□ 0.53
CLN3-240ENST00000631023 HDHD5Q9BXW7 423 aa18.38■□□□□ 0.53
CLN3-240ENST00000631023 C6orf203Q9P0P8 240 aaPredicted RBP18.38■□□□□ 0.53
CLN3-240ENST00000631023 PRR14LQ5THK1 2151 aa18.37■□□□□ 0.53
CLN3-240ENST00000631023 ALPK2Q86TB3 2170 aa18.37■□□□□ 0.53
CLN3-240ENST00000631023 IGKV1D-42A0A075B6H8 117 aa18.37■□□□□ 0.53
CLN3-240ENST00000631023 FTCDNL1E5RQL4 147 aa18.37■□□□□ 0.53
CLN3-240ENST00000631023 CNOT4O95628 575 aaKnown RBP18.37■□□□□ 0.53
CLN3-240ENST00000631023 TNFRSF1BP20333 461 aa18.37■□□□□ 0.53
CLN3-240ENST00000631023 OR1E2P47887 323 aa18.37■□□□□ 0.53
CLN3-240ENST00000631023 TAS2R41P59536 307 aa18.37■□□□□ 0.53
CLN3-240ENST00000631023 SLC25A3Q00325 362 aa18.37■□□□□ 0.53
CLN3-240ENST00000631023 SAMD4BQ5PRF9 694 aaKnown RBP18.37■□□□□ 0.53
CLN3-240ENST00000631023 LINC00114Q6XXX2 140 aa18.37■□□□□ 0.53
CLN3-240ENST00000631023 DEF8Q6ZN54 512 aa18.37■□□□□ 0.53
CLN3-240ENST00000631023 GPAT4Q86UL3 456 aa18.37■□□□□ 0.53
CLN3-240ENST00000631023 P3H2Q8IVL5 708 aa18.37■□□□□ 0.53
CLN3-240ENST00000631023 APH1AQ96BI3 265 aa18.37■□□□□ 0.53
CLN3-240ENST00000631023 CDRT15Q96T59 188 aa18.37■□□□□ 0.53
CLN3-240ENST00000631023 MED18Q9BUE0 208 aa18.37■□□□□ 0.53
CLN3-240ENST00000631023 SLC7A7Q9UM01 511 aa18.37■□□□□ 0.53
CLN3-240ENST00000631023 RASD1Q9Y272 281 aa18.37■□□□□ 0.53
CLN3-240ENST00000631023 GPR52Q9Y2T5 361 aa18.37■□□□□ 0.53
CLN3-240ENST00000631023 ZNF682O95780 498 aa18.36■□□□□ 0.53
CLN3-240ENST00000631023 GGT1P19440 569 aa18.36■□□□□ 0.53
CLN3-240ENST00000631023 IFNA8P32881 189 aa18.36■□□□□ 0.53
CLN3-240ENST00000631023 DAZAP2Q15038 168 aaPredicted RBP18.36■□□□□ 0.53
CLN3-240ENST00000631023 P2RY6Q15077 328 aa18.36■□□□□ 0.53
CLN3-240ENST00000631023 TTC33Q6PID6 262 aaPredicted RBP18.36■□□□□ 0.53
CLN3-240ENST00000631023 STAC2Q6ZMT1 411 aa18.36■□□□□ 0.53
CLN3-240ENST00000631023 Q6ZT83 130 aa18.36■□□□□ 0.53
CLN3-240ENST00000631023 CBLL1Q75N03 491 aa18.36■□□□□ 0.53
CLN3-240ENST00000631023 RNF148Q8N7C7 305 aa18.36■□□□□ 0.53
CLN3-240ENST00000631023 OR9K2Q8NGE7 335 aa18.36■□□□□ 0.53
CLN3-240ENST00000631023 SLC41A3Q96GZ6 507 aa18.36■□□□□ 0.53
CLN3-240ENST00000631023 ZNF226Q9NYT6 803 aa18.36■□□□□ 0.53
CLN3-240ENST00000631023 RPS6KA6Q9UK32 745 aa18.36■□□□□ 0.53
CLN3-240ENST00000631023 B3GALT5Q9Y2C3 310 aa18.36■□□□□ 0.53
CLN3-240ENST00000631023 FLVCR1Q9Y5Y0 555 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms