RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 DAPP51397 102 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 P2RX1P51575 399 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 ALDH3A2P51648 485 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 COPZ1P61923 177 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 PPP2R2BQ00005 443 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 C17orf67Q0P5P2 114 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 TOMM34Q15785 309 aaPredicted RBP11.41□□□□□ -0.58
UPF1-208ENST00000600012 HSPB2Q16082 182 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 ALG10BQ5I7T1 473 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 ZNF613Q6PF04 617 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 LSMEM1Q8N8F7 131 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 ATG16L2Q8NAA4 619 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 TOR1AIP2Q8NFQ8 470 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 OR4K5Q8NGD3 323 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 OR5W2Q8NH69 310 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 ZNF563Q8TA94 476 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 NEIL3Q8TAT5 605 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 TMEM255BQ8WV15 326 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 C3orf49Q96BT1 292 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 LRRC46Q96FV0 321 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 SECISBP2Q96T21 854 aaKnown RBP11.41□□□□□ -0.58
UPF1-208ENST00000600012 ZNF184Q99676 751 aaPredicted RBP11.41□□□□□ -0.58
UPF1-208ENST00000600012 RBM4BQ9BQ04 359 aaKnown RBP11.41□□□□□ -0.58
UPF1-208ENST00000600012 RBM4Q9BWF3 364 aaKnown RBP11.41□□□□□ -0.58
UPF1-208ENST00000600012 CLEC4MQ9H2X3 399 aaPredicted RBP11.41□□□□□ -0.58
UPF1-208ENST00000600012 USE1Q9NZ43 259 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 MED11Q9P086 117 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 TMEFF2Q9UIK5 374 aaPredicted RBP11.41□□□□□ -0.58
UPF1-208ENST00000600012 LRRC3CA6NJW4 275 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 DLGAP1O14490 977 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 DVL2O14641 736 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 CHP2O43745 196 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 OR10H3O60404 316 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 MITFO75030 526 aaPredicted RBP11.4□□□□□ -0.58
UPF1-208ENST00000600012 RFPL3SP0C7P2 107 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 THRBP10828 461 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 UQCRBP14927 111 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 PGCP20142 388 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 KLK2P20151 261 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 UQCRC1P31930 480 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 ASCL1P50553 236 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 UGT2B15P54855 530 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 IL1RL1Q01638 556 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 CBFBQ13951 182 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 GK3PQ14409 553 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 QPRTQ15274 297 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 ZIK1Q3SY52 487 aaPredicted RBP11.4□□□□□ -0.58
UPF1-208ENST00000600012 WBP2NLQ6ICG8 309 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 FAHD1Q6P587 224 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 TMEM81Q6P7N7 255 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 GALNT5Q7Z7M9 940 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 MEX3DQ86XN8 651 aaKnown RBP11.4□□□□□ -0.58
UPF1-208ENST00000600012 AQP11Q8NBQ7 271 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 RELL2Q8NC24 303 aaPredicted RBP11.4□□□□□ -0.58
UPF1-208ENST00000600012 OR2M3Q8NG83 312 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 DNAJC9Q8WXX5 260 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 SLC38A4Q969I6 547 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 ZNF597Q96LX8 424 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 FEVQ99581 238 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 NIPSNAP1Q9BPW8 284 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 PSD2Q9BQI7 771 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 ANGPTL4Q9BY76 406 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 SLC6A15Q9H2J7 730 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 DSN1Q9H410 356 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 ANKRD19PQ9H560 264 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 PROK2Q9HC23 129 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 C8orf4Q9NR00 106 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 SDHAF3Q9NRP4 125 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 RASSF1Q9NS23 344 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 CRIM1Q9NZV1 1036 aa11.4□□□□□ -0.58
UPF1-208ENST00000600012 ARRDC5A6NEK1 342 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 KPNA4O00629 521 aaPredicted RBP11.39□□□□□ -0.59
UPF1-208ENST00000600012 SNAP29O95721 258 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 POU2F1P14859 743 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 CBLP22681 906 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 IGFBP5P24593 272 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 DNASE1P24855 282 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 SUMO3P55854 103 aaPredicted RBP11.39□□□□□ -0.59
UPF1-208ENST00000600012 SNTA1Q13424 505 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 FBXL19-AS1Q494R0 122 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 KDM4DQ6B0I6 523 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 ZNF770Q6IQ21 691 aaPredicted RBP11.39□□□□□ -0.59
UPF1-208ENST00000600012 SLC30A6Q6NXT4 461 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 PGBD2Q6P3X8 592 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 ULK3Q6PHR2 472 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 ZNF730Q6ZMV8 503 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 SEM1Q6ZVN7 128 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 P3H2Q8IVL5 708 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 PFN4Q8NHR9 129 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 GPR119Q8TDV5 335 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 FAM222BQ8WU58 562 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 ACOT11Q8WXI4 607 aaPredicted RBP11.39□□□□□ -0.59
UPF1-208ENST00000600012 RNASE6Q93091 150 aaKnown RBP11.39□□□□□ -0.59
UPF1-208ENST00000600012 GTPBP3Q969Y2 492 aaKnown RBP11.39□□□□□ -0.59
UPF1-208ENST00000600012 JSRP1Q96MG2 331 aaPredicted RBP11.39□□□□□ -0.59
UPF1-208ENST00000600012 LIME1Q9H400 295 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 KRT84Q9NSB2 600 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 SMPD3Q9NY59 655 aaPredicted RBP11.39□□□□□ -0.59
UPF1-208ENST00000600012 TAS2R10Q9NYW0 307 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 SELENONQ9NZV5 590 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms