RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 FRS3O43559 492 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 HNRNPCL1O60812 293 aaKnown RBP8.6□□□□□ -1.03
VRK3-216ENST00000599342 WNT11O96014 354 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 TFPTP0C1Z6 253 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 HNRNPCL4P0DMR1 293 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 BMP4P12644 408 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 CDH2P19022 906 aaPredicted RBP8.6□□□□□ -1.03
VRK3-216ENST00000599342 PTNP21246 168 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 GTF2E2P29084 291 aaKnown RBP8.6□□□□□ -1.03
VRK3-216ENST00000599342 ACAA2P42765 397 aaKnown RBP8.6□□□□□ -1.03
VRK3-216ENST00000599342 POLR2JP52435 117 aaKnown RBP8.6□□□□□ -1.03
VRK3-216ENST00000599342 MVDP53602 400 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 FOXG1P55316 489 aaPredicted RBP8.6□□□□□ -1.03
VRK3-216ENST00000599342 PRPS1P60891 318 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 IRX1P78414 480 aaPredicted RBP8.6□□□□□ -1.03
VRK3-216ENST00000599342 BNIP2Q12982 314 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 GTDC1Q4AE62 458 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 C1QTNF12Q5T7M4 302 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 PRAMEF8Q5VWM4 474 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 PRAMEF7Q5VXH5 474 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 ZNF544Q6NX49 715 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 CLEC2AQ6UVW9 174 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 TMEM99Q8N816 258 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 OR9K2Q8NGE7 335 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 VPS33AQ96AX1 596 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 AURKBQ96GD4 344 aaPredicted RBP8.6□□□□□ -1.03
VRK3-216ENST00000599342 TMEM19Q96HH6 336 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 ZNF385AQ96PM9 386 aaKnown RBP8.6□□□□□ -1.03
VRK3-216ENST00000599342 KCNS3Q9BQ31 491 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 SPATA9Q9BWV2 254 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 PIF1Q9H611 641 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 SLC17A5Q9NRA2 495 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 IFT52Q9Y366 437 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 ATP23Q9Y6H3 246 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 USF3Q68DE3 2245 aa8.6□□□□□ -1.03
VRK3-216ENST00000599342 MAP1AP78559 2803 aaPredicted RBP8.59□□□□□ -1.03
VRK3-216ENST00000599342 KIAA1324LA8MWY0 1029 aaPredicted RBP8.59□□□□□ -1.03
VRK3-216ENST00000599342 C5orf58C9J3I9 102 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 ZNF587BE7ETH6 402 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 KLF11O14901 512 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 TLX2O43763 284 aaPredicted RBP8.59□□□□□ -1.03
VRK3-216ENST00000599342 CRLF1O75462 422 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 VAMP5O95183 116 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 AHSA1O95433 338 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 DSCR9P59020 149 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 KRTAP1-1Q07627 177 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 FADDQ13158 208 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 RAB35Q15286 201 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 MAPK11Q15759 364 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 ZNF311Q5JNZ3 666 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 C1orf140Q5VVS0 124 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 C11orf71Q6IPW1 123 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 B3GLCTQ6Y288 498 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 DNM1P46Q6ZS02 220 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 MAVSQ7Z434 540 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 SERPINA11Q86U17 422 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 LSRQ86X29 649 aaPredicted RBP8.59□□□□□ -1.03
VRK3-216ENST00000599342 GOLGA6L1Q8N7Z2 621 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 WDR31Q8NA23 367 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 OR9I1Q8NGQ6 314 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 BBS10Q8TAM1 723 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 OR52B2Q96RD2 323 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 TMEM45AQ9NWC5 275 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 RPS6KB2Q9UBS0 482 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 RASD1Q9Y272 281 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 USH1CQ9Y6N9 552 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 PRR14LQ5THK1 2151 aa8.59□□□□□ -1.03
VRK3-216ENST00000599342 IGHV4-30-2A0A087WSY4 118 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 OR6C65A6NJZ3 312 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 ELOA3DA6NLF2 546 aaPredicted RBP8.58□□□□□ -1.04
VRK3-216ENST00000599342 H7C417 338 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 CLIC1O00299 241 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 POLR3GO15318 223 aaPredicted RBP8.58□□□□□ -1.04
VRK3-216ENST00000599342 CD5LO43866 347 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 PRG2P13727 222 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 PAX7P23759 505 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 APOBEC3AP31941 199 aaPredicted RBP8.58□□□□□ -1.04
VRK3-216ENST00000599342 UBE2NP61088 152 aaKnown RBP8.58□□□□□ -1.04
VRK3-216ENST00000599342 SLC25A3Q00325 362 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 CHRNB3Q05901 458 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 RGNQ15493 299 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 ELOA3BQ3SY89 546 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 NIPAL3Q6P499 406 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 SLC2A7Q6PXP3 512 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 CLIP4Q8N3C7 705 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 ZIC4Q8N9L1 334 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 ELOA3Q8NG57 546 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 STK35Q8TDR2 534 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 GTF2H4Q92759 462 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 SLC35B4Q969S0 331 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 C3orf49Q96BT1 292 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 TLCD1Q96CP7 247 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 SLC25A36Q96CQ1 311 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 ALKBH3Q96Q83 286 aaPredicted RBP8.58□□□□□ -1.04
VRK3-216ENST00000599342 TMBIM4Q9HC24 238 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 A4GALTQ9NPC4 353 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 OBP2BQ9NPH6 170 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 TCF7L2Q9NQB0 619 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 YAE1D1Q9NRH1 226 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 PCDHB14Q9Y5E9 798 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms