RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 TAS2R41P59536 307 aa9.42□□□□□ -0.9
LIG1-210ENST00000596332 ST3GAL3Q11203 375 aa9.42□□□□□ -0.9
LIG1-210ENST00000596332 DGCR6Q14129 220 aa9.42□□□□□ -0.9
LIG1-210ENST00000596332 FLOT2Q14254 428 aa9.42□□□□□ -0.9
LIG1-210ENST00000596332 ZNF74Q16587 644 aa9.42□□□□□ -0.9
LIG1-210ENST00000596332 ELOA3BQ3SY89 546 aa9.42□□□□□ -0.9
LIG1-210ENST00000596332 ZNF770Q6IQ21 691 aaPredicted RBP9.42□□□□□ -0.9
LIG1-210ENST00000596332 PODNL1Q6PEZ8 512 aa9.42□□□□□ -0.9
LIG1-210ENST00000596332 MYO7BQ6PIF6 2116 aa9.42□□□□□ -0.9
LIG1-210ENST00000596332 TMEM179BQ7Z7N9 219 aa9.42□□□□□ -0.9
LIG1-210ENST00000596332 MEX3DQ86XN8 651 aaKnown RBP9.42□□□□□ -0.9
LIG1-210ENST00000596332 RELL2Q8NC24 303 aaPredicted RBP9.42□□□□□ -0.9
LIG1-210ENST00000596332 ELOA3Q8NG57 546 aa9.42□□□□□ -0.9
LIG1-210ENST00000596332 ABHD3Q8WU67 409 aa9.42□□□□□ -0.9
LIG1-210ENST00000596332 TMEM239Q8WW34 195 aa9.42□□□□□ -0.9
LIG1-210ENST00000596332 CPNE4Q96A23 557 aaPredicted RBP9.42□□□□□ -0.9
LIG1-210ENST00000596332 STARD4Q96DR4 205 aa9.42□□□□□ -0.9
LIG1-210ENST00000596332 PIP5K1AQ99755 562 aa9.42□□□□□ -0.9
LIG1-210ENST00000596332 CHID1Q9BWS9 393 aa9.42□□□□□ -0.9
LIG1-210ENST00000596332 NTN4Q9HB63 628 aa9.42□□□□□ -0.9
LIG1-210ENST00000596332 JKAMPQ9P055 326 aa9.42□□□□□ -0.9
LIG1-210ENST00000596332 COL12A1Q99715 3063 aa9.42□□□□□ -0.9
LIG1-210ENST00000596332 ARHGAP21Q5T5U3 1957 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 IGKV3D-15A0A087WSY6 115 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 A0A1W2PNV4 684 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 DHRS12A0PJE2 317 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 SLC22A20A6NK97 555 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 AQP7P3A6NL99 342 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 ANKRD65E5RJM6 399 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 H3BNX3 289 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 CDC42EP2O14613 210 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 SS18L1O75177 396 aaPredicted RBP9.41□□□□□ -0.9
LIG1-210ENST00000596332 GMNNO75496 209 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 AKR7A3O95154 331 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 FABP3P05413 133 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 ASAH2BP0C7U1 165 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 RAP2AP10114 183 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 UMPSP11172 480 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 NQO1P15559 274 aaKnown RBP9.41□□□□□ -0.9
LIG1-210ENST00000596332 SLC7A1P30825 629 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 IDUAP35475 653 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 RBM34P42696 430 aaKnown RBP9.41□□□□□ -0.9
LIG1-210ENST00000596332 OMPP47874 163 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 SLC16A1P53985 500 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 CTBP2P56545 445 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 OR2B6P58173 313 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 FXYD6P3P58550 94 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 ACTR3P61158 418 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 RPS3AP61247 264 aaKnown RBP9.41□□□□□ -0.9
LIG1-210ENST00000596332 PRKCDQ05655 676 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 TFF3Q07654 80 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 PPP1R8Q12972 351 aaKnown RBP9.41□□□□□ -0.9
LIG1-210ENST00000596332 SLC17A1Q14916 467 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 PDK3Q15120 406 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 OR7A5Q15622 319 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 SGCBQ16585 318 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 ZSCAN26Q16670 478 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 FAM69AQ5T7M9 428 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 TMEM211Q6ICI0 200 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 VWA1Q6PCB0 445 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 PAQR6Q6TCH4 344 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 FCRLAQ7L513 359 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 NUFIP2Q7Z417 695 aaKnown RBP9.41□□□□□ -0.9
LIG1-210ENST00000596332 BTLAQ7Z6A9 289 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 GCNT2Q8N0V5 402 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 KDM8Q8N371 416 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 ACOT11Q8WXI4 607 aaPredicted RBP9.41□□□□□ -0.9
LIG1-210ENST00000596332 MCUR1Q96AQ8 359 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 INTS12Q96CB8 462 aaKnown RBP9.41□□□□□ -0.9
LIG1-210ENST00000596332 SLC19A3Q9BZV2 496 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 ENKD1Q9H0I2 346 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 ANKRD19PQ9H560 264 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 DENND2DQ9H6A0 471 aaPredicted RBP9.41□□□□□ -0.9
LIG1-210ENST00000596332 BCO1Q9HAY6 547 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 FANCFQ9NPI8 374 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 PAQR5Q9NXK6 330 aaPredicted RBP9.41□□□□□ -0.9
LIG1-210ENST00000596332 TAS2R5Q9NYW4 299 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 STOML1Q9UBI4 398 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 CLEC4AQ9UMR7 237 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 TESMINQ9Y4I5 508 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 LYVE1Q9Y5Y7 322 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 SPIN1Q9Y657 262 aaPredicted RBP9.41□□□□□ -0.9
LIG1-210ENST00000596332 MED12LQ86YW9 2145 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 LRRK2Q5S007 2527 aa9.41□□□□□ -0.9
LIG1-210ENST00000596332 DOCK7Q96N67 2140 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 LOC102725191A0A1B0GVB3 256 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 SH3PXD2BA1X283 911 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 M0R082 166 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 PLPP3O14495 311 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 FKBP6O75344 327 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 PTP4A3O75365 173 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 GPIP06744 558 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 H1F0P07305 194 aaKnown RBP9.4□□□□□ -0.9
LIG1-210ENST00000596332 HLA-DOBP13765 273 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 CBLP22681 906 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 CTSSP25774 331 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 GRPRP30550 384 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 RRM2P31350 389 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 IST1P53990 364 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 CSNK2A1P68400 391 aaPredicted RBP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms