RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 TCF7L2Q9NQB0 619 aa12.93□□□□□ -0.34
PNKP-202ENST00000593706 EXOSC3Q9NQT5 275 aaKnown RBP12.93□□□□□ -0.34
PNKP-202ENST00000593706 TMEM160Q9NX00 188 aa12.93□□□□□ -0.34
PNKP-202ENST00000593706 SLC9A8Q9Y2E8 581 aa12.93□□□□□ -0.34
PNKP-202ENST00000593706 AMDHD2Q9Y303 409 aa12.93□□□□□ -0.34
PNKP-202ENST00000593706 PMF1-BGLAPU3KQ54 211 aa12.93□□□□□ -0.34
PNKP-202ENST00000593706 AGAP5A6NIR3 686 aa12.92□□□□□ -0.34
PNKP-202ENST00000593706 CLDN24A6NM45 220 aa12.92□□□□□ -0.34
PNKP-202ENST00000593706 F12P00748 615 aaPredicted RBP12.92□□□□□ -0.34
PNKP-202ENST00000593706 FKBP2P26885 142 aaKnown RBP12.92□□□□□ -0.34
PNKP-202ENST00000593706 POLR2JP52435 117 aaKnown RBP12.92□□□□□ -0.34
PNKP-202ENST00000593706 EFNA4P52798 201 aa12.92□□□□□ -0.34
PNKP-202ENST00000593706 SLC16A1P53985 500 aa12.92□□□□□ -0.34
PNKP-202ENST00000593706 TGFBR3Q03167 851 aa12.92□□□□□ -0.34
PNKP-202ENST00000593706 GPAT3Q53EU6 434 aa12.92□□□□□ -0.34
PNKP-202ENST00000593706 KLHL24Q6TFL4 600 aa12.92□□□□□ -0.34
PNKP-202ENST00000593706 LRRC74BQ6ZQY2 392 aa12.92□□□□□ -0.34
PNKP-202ENST00000593706 HMGN2P46Q86SG4 172 aa12.92□□□□□ -0.34
PNKP-202ENST00000593706 FUNDC1Q8IVP5 155 aa12.92□□□□□ -0.34
PNKP-202ENST00000593706 CCDC103Q8IW40 242 aa12.92□□□□□ -0.34
PNKP-202ENST00000593706 C17orf78Q8N4C9 275 aa12.92□□□□□ -0.34
PNKP-202ENST00000593706 STON2Q8WXE9 905 aa12.92□□□□□ -0.34
PNKP-202ENST00000593706 GTF2H4Q92759 462 aa12.92□□□□□ -0.34
PNKP-202ENST00000593706 AURKBQ96GD4 344 aaPredicted RBP12.92□□□□□ -0.34
PNKP-202ENST00000593706 CCDC28BQ9BUN5 200 aa12.92□□□□□ -0.34
PNKP-202ENST00000593706 PAIP1Q9H074 479 aaKnown RBP12.92□□□□□ -0.34
PNKP-202ENST00000593706 TMEM181Q9P2C4 612 aa12.92□□□□□ -0.34
PNKP-202ENST00000593706 FKBP7Q9Y680 259 aa12.92□□□□□ -0.34
PNKP-202ENST00000593706 LY6HO94772 140 aa12.91□□□□□ -0.34
PNKP-202ENST00000593706 IGHV4-31P0DP07 118 aa12.91□□□□□ -0.34
PNKP-202ENST00000593706 USF1P22415 310 aaPredicted RBP12.91□□□□□ -0.34
PNKP-202ENST00000593706 CLK1P49759 484 aaKnown RBP12.91□□□□□ -0.34
PNKP-202ENST00000593706 AQP5P55064 265 aa12.91□□□□□ -0.34
PNKP-202ENST00000593706 FOXG1P55316 489 aaPredicted RBP12.91□□□□□ -0.34
PNKP-202ENST00000593706 MSRB3Q8IXL7 192 aa12.91□□□□□ -0.34
PNKP-202ENST00000593706 C1orf162Q8NEQ5 155 aaPredicted RBP12.91□□□□□ -0.34
PNKP-202ENST00000593706 CKAP2Q8WWK9 683 aa12.91□□□□□ -0.34
PNKP-202ENST00000593706 PROX1Q92786 737 aa12.91□□□□□ -0.34
PNKP-202ENST00000593706 DDIT4LQ96D03 193 aa12.91□□□□□ -0.34
PNKP-202ENST00000593706 ITCHQ96J02 903 aa12.91□□□□□ -0.34
PNKP-202ENST00000593706 MUS81Q96NY9 551 aa12.91□□□□□ -0.34
PNKP-202ENST00000593706 CHODLQ9H9P2 273 aa12.91□□□□□ -0.34
PNKP-202ENST00000593706 INTS9Q9NV88 658 aaKnown RBP12.91□□□□□ -0.34
PNKP-202ENST00000593706 ARGLU1Q9NWB6 273 aaPredicted RBP12.91□□□□□ -0.34
PNKP-202ENST00000593706 PARPBPQ9NWS1 579 aa12.91□□□□□ -0.34
PNKP-202ENST00000593706 DCTN4Q9UJW0 460 aa12.91□□□□□ -0.34
PNKP-202ENST00000593706 TMED7-TICAM2A0A0A6YYA0 188 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 ATP6V1G2-DDX39BF2Z307 99 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 POLR3GO15318 223 aaPredicted RBP12.9□□□□□ -0.34
PNKP-202ENST00000593706 LMX1BO60663 402 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 EIF1BO60739 113 aaKnown RBP12.9□□□□□ -0.34
PNKP-202ENST00000593706 KRT75O95678 551 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 TFPTP0C1Z6 253 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 ETFAP13804 333 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 SRD5A1P18405 259 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 APOBEC3AP31941 199 aaPredicted RBP12.9□□□□□ -0.34
PNKP-202ENST00000593706 NTF4P34130 210 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 HTR3AP46098 478 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 IDH2P48735 452 aaKnown RBP12.9□□□□□ -0.34
PNKP-202ENST00000593706 GZMKP49863 264 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 ANXA11P50995 505 aaKnown RBP12.9□□□□□ -0.34
PNKP-202ENST00000593706 SNRPD2P62316 118 aaKnown RBP12.9□□□□□ -0.34
PNKP-202ENST00000593706 SLC35A1P78382 337 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 KCNJ10P78508 379 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 LSM11P83369 360 aaKnown RBP eCLIP12.9□□□□□ -0.341e-11■■■■■ 50.1
PNKP-202ENST00000593706 SLC25A3Q00325 362 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 GGTLC2Q14390 218 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 CARTPTQ16568 116 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 KRTAP24-1Q3LI83 254 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 SLC2A7Q6PXP3 512 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 BLOC1S3Q6QNY0 202 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 ADGRG3Q86Y34 549 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 CMIPQ8IY22 773 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 CNOT9Q92600 299 aaKnown RBP12.9□□□□□ -0.34
PNKP-202ENST00000593706 PMM1Q92871 262 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 FBXO17Q96EF6 278 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 PIMREGQ9BSJ6 248 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 NAA11Q9BSU3 229 aaPredicted RBP12.9□□□□□ -0.34
PNKP-202ENST00000593706 ZNF385DQ9H6B1 395 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 RMND5AQ9H871 391 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 TPT1P8Q9HAU6 139 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 SLC17A5Q9NRA2 495 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 SLC7A10Q9NS82 523 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.9□□□□□ -0.34
PNKP-202ENST00000593706 ZNF446Q9NWS9 450 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 SLC25A37Q9NYZ2 338 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 KCNS2Q9ULS6 477 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 TRAPPC4Q9Y296 219 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 TMED7Q9Y3B3 224 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 FLVCR1Q9Y5Y0 555 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 GMEB1Q9Y692 573 aa12.9□□□□□ -0.34
PNKP-202ENST00000593706 TRBV5-3A0A0A0MS03 114 aa12.89□□□□□ -0.35
PNKP-202ENST00000593706 HAX1O00165 279 aa12.89□□□□□ -0.35
PNKP-202ENST00000593706 FAAHO00519 579 aa12.89□□□□□ -0.35
PNKP-202ENST00000593706 AP3D1O14617 1153 aa12.89□□□□□ -0.35
PNKP-202ENST00000593706 WNT11O96014 354 aa12.89□□□□□ -0.35
PNKP-202ENST00000593706 BMP2P12643 396 aa12.89□□□□□ -0.35
PNKP-202ENST00000593706 UQCRBP14927 111 aa12.89□□□□□ -0.35
PNKP-202ENST00000593706 CDH2P19022 906 aaPredicted RBP12.89□□□□□ -0.35
PNKP-202ENST00000593706 HNF1AP20823 631 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms