RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 RASD1Q9Y272 281 aa12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 ZNF443Q9Y2A4 671 aaPredicted RBP12.74□□□□□ -0.37
SMARCE1-216ENST00000580419 CCT8L1PA6NM43 557 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 TMEM229AB2RXF0 380 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 C9JVG2 144 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 H7C417 338 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 RAMP1O60894 148 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 C1QCP02747 245 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 BMP4P12644 408 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 CRATP43155 626 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 P2RY4P51582 365 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 CDH11P55287 796 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 NME5P56597 212 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 PPP2R2BQ00005 443 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 FAPQ12884 760 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 RGNQ15493 299 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 SLC9B1Q4ZJI4 515 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 OTUD3Q5T2D3 398 aaPredicted RBP12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 AGBL2Q5U5Z8 902 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 NXNQ6DKJ4 435 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 ZNF836Q6ZNA1 936 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 MAVSQ7Z434 540 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 ZIC4Q8N9L1 334 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 BHLHE22Q8NFJ8 381 aaPredicted RBP12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 OR9K2Q8NGE7 335 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 BBS10Q8TAM1 723 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 MAGEE2Q8TD90 523 aaPredicted RBP12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 ZNF775Q96BV0 537 aaPredicted RBP12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 ADAD1Q96M93 576 aaKnown RBP12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 REG4Q9BYZ8 158 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 FKRPQ9H9S5 495 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 SLC17A5Q9NRA2 495 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 SLC7A10Q9NS82 523 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 RLIMQ9NVW2 624 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 UPB1Q9UBR1 384 aa12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 FBXO9Q9UK97 447 aaPredicted RBP12.73□□□□□ -0.37
SMARCE1-216ENST00000580419 ANK3Q12955 4377 aaKnown RBP12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 ZC3H12DA2A288 527 aaKnown RBP12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 CLIC1O00299 241 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 OR2T1O43869 369 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 RAD51DO75771 328 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 WNT11O96014 354 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 KITP10721 976 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 ETFAP13804 333 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 PRKAR1BP31321 381 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 SH3BGRP55822 239 aaPredicted RBP12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 PRPS1P60891 318 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 KRTAP1-1Q07627 177 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 CASP12Q6UXS9 341 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 ATG4DQ86TL0 474 aaPredicted RBP12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 WDR31Q8NA23 367 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 OR6S1Q8NH40 331 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 C3orf49Q96BT1 292 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 TMEM19Q96HH6 336 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 HS6ST2Q96MM7 605 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 OR52B2Q96RD2 323 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 CCDC28BQ9BUN5 200 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 TAPBPLQ9BX59 468 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 LINC00470Q9BZP3 86 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 PAIP1Q9H074 479 aaKnown RBP12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 RCE1Q9Y256 329 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 CHST2Q9Y4C5 530 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 PCDHB14Q9Y5E9 798 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 USH1CQ9Y6N9 552 aa12.72□□□□□ -0.37
SMARCE1-216ENST00000580419 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.72□□□□□ -0.371e-10■■■■□ 23.8
SMARCE1-216ENST00000580419 STAB1Q9NY15 2570 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 ELOA3DA6NLF2 546 aaPredicted RBP12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 FTCDNL1E5RQL4 147 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 E7EQL1 145 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 RPL36A-HNRNPH2H7BZ11 118 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 FRS3O43559 492 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 IGHV4-39P01824 125 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 BCHEP06276 602 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 ATP4BP51164 291 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 STX1BP61266 288 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 CEACAM7Q14002 265 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 VEZF1Q14119 521 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 MFSD13AQ14CX5 517 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 ELOA3BQ3SY89 546 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 TSPO2Q5TGU0 170 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 C1orf140Q5VVS0 124 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 TMEM225Q6GV28 225 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 BLOC1S3Q6QNY0 202 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 SLC22A25Q6T423 547 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 NET1Q7Z628 596 aaPredicted RBP12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 VRK2Q86Y07 508 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 FBXL14Q8N1E6 418 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 MUC15Q8N387 334 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 GOLGA6L1Q8N7Z2 621 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 TMEM99Q8N816 258 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 ADPRHL1Q8NDY3 354 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 ELOA3Q8NG57 546 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 OR10H5Q8NGA6 315 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 PNPT1Q8TCS8 783 aaKnown RBP12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 NEUROG1Q92886 237 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 TMEM38AQ9H6F2 299 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 TCF7L2Q9NQB0 619 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 CRNNQ9UBG3 495 aaPredicted RBP12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 CORO2BQ9UQ03 480 aa12.71□□□□□ -0.37
SMARCE1-216ENST00000580419 ARPC4-TTLL3A0A0A6YYG9 625 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms