RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 ELOA3DA6NLF2 546 aaPredicted RBP13.11□□□□□ -0.31
SS18-212ENST00000579061 AKR7A3O95154 331 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 LGI1O95970 557 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 PNMTP11086 282 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 IGHV1-2P23083 117 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 AQP1P29972 269 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 NTF4P34130 210 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 PCGF2P35227 344 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 GZMMP51124 257 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 RGS8P57771 180 aaPredicted RBP13.11□□□□□ -0.31
SS18-212ENST00000579061 NCALDP61601 193 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 EGR4Q05215 589 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 DMTNQ08495 405 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 TSC22D1Q15714 1073 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 TAB1Q15750 504 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 ACKR1Q16570 336 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 ELOA3BQ3SY89 546 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 MMEL1Q495T6 779 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 GLIPR1L2Q4G1C9 344 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 TIMM23BQ5SRD1 257 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 INTS11Q5TA45 600 aaKnown RBP13.11□□□□□ -0.31
SS18-212ENST00000579061 NANOGP8Q6NSW7 305 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 ULK3Q6PHR2 472 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 C20orf204Q6ZNR8 217 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 PATL1Q86TB9 770 aaKnown RBP13.11□□□□□ -0.31
SS18-212ENST00000579061 COMTD1Q86VU5 262 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 TMEM99Q8N816 258 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 ELOA3Q8NG57 546 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 OR8J3Q8NGG0 315 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 OR52E4Q8NGH9 312 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 SLC38A4Q969I6 547 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 PIGTQ969N2 578 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 LRRC58Q96CX6 371 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 PLPPR2Q96GM1 343 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 ZNF317Q96PQ6 595 aaPredicted RBP13.11□□□□□ -0.31
SS18-212ENST00000579061 NANOGQ9H9S0 305 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 TMEM27Q9HBJ8 222 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 ASB6Q9NWX5 421 aa13.11□□□□□ -0.31
SS18-212ENST00000579061 FTCDNL1E5RQL4 147 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 M0QX08 132 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 OR2T1O43869 369 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 FMO6PO60774 539 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 LYZL6O75951 148 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 GGT1P19440 569 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 HTR2AP28223 471 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 P2RY4P51582 365 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 CAPRIN1Q14444 709 aaKnown RBP13.1□□□□□ -0.31
SS18-212ENST00000579061 ALG10BQ5I7T1 473 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 TMEM225Q6GV28 225 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 CASP12Q6UXS9 341 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 ZNF704Q6ZNC4 412 aaPredicted RBP13.1□□□□□ -0.31
SS18-212ENST00000579061 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.1□□□□□ -0.31
SS18-212ENST00000579061 RANBP3LQ86VV4 465 aaPredicted RBP13.1□□□□□ -0.31
SS18-212ENST00000579061 UBE2J2Q8N2K1 259 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 PCYOX1LQ8NBM8 494 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 OR9K2Q8NGE7 335 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 OR6S1Q8NH40 331 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 OR10A6Q8NH74 314 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 C10orf82Q8WW14 230 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 MUCL1Q96DR8 90 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 SLC47A1Q96FL8 570 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 PTDSS2Q9BVG9 487 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 ADPRHL2Q9NX46 363 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 TAS2R16Q9NYV7 291 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 RASD1Q9Y272 281 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 CAPN7Q9Y6W3 813 aa13.1□□□□□ -0.31
SS18-212ENST00000579061 A0A0B4J2E0 115 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 A0A1B0GX12 115 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 PDLIM1O00151 329 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 FXYD1O00168 92 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 MRASO14807 208 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 PPA1Q15181 289 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 OR1Q1Q15612 314 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 NRF1Q16656 503 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 DUSP7Q16829 419 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 VMACQ2NL98 169 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 NCMAPQ5T1S8 102 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 SWT1Q5T5J6 900 aaKnown RBP13.09□□□□□ -0.31
SS18-212ENST00000579061 C1QTNF12Q5T7M4 302 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 FAM69AQ5T7M9 428 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 REP15Q6BDI9 236 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 OR7E24Q6IFN5 339 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 ADAM5Q6NVV9 412 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 SEZ6L2Q6UXD5 910 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 CCDC80Q76M96 950 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 CALHM3Q86XJ0 350 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 ZIC4Q8N9L1 334 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 POMGNT2Q8NAT1 580 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 RASSF5Q8WWW0 418 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 ARHGDIGQ99819 225 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 ECSITQ9BQ95 431 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 ESRP2Q9H6T0 727 aaKnown RBP13.09□□□□□ -0.31
SS18-212ENST00000579061 UBTD1Q9HAC8 227 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 GID8Q9NWU2 228 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 SELENONQ9NZV5 590 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 UPB1Q9UBR1 384 aa13.09□□□□□ -0.31
SS18-212ENST00000579061 TRAV36DV7A0A075B6V5 113 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 A0A087WUJ7 227 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 CIB4A0PJX0 185 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 OR5H1A6NKK0 313 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms