RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 OFCC1Q8IZS5 231 aa18.43■□□□□ 0.54
VPS53-210ENST00000571456 CCDC124Q96CT7 223 aaKnown RBP18.43■□□□□ 0.54
VPS53-210ENST00000571456 SLC41A3Q96GZ6 507 aa18.43■□□□□ 0.54
VPS53-210ENST00000571456 TAPBPLQ9BX59 468 aa18.43■□□□□ 0.54
VPS53-210ENST00000571456 PRRG4Q9BZD6 226 aa18.43■□□□□ 0.54
VPS53-210ENST00000571456 ACOT8O14734 319 aa18.42■□□□□ 0.54
VPS53-210ENST00000571456 CXCL13O43927 109 aa18.42■□□□□ 0.54
VPS53-210ENST00000571456 IL18BPO95998 194 aa18.42■□□□□ 0.54
VPS53-210ENST00000571456 RHCEP18577 417 aa18.42■□□□□ 0.54
VPS53-210ENST00000571456 ENPP1P22413 925 aa18.42■□□□□ 0.54
VPS53-210ENST00000571456 AGFG1P52594 562 aaKnown RBP18.42■□□□□ 0.54
VPS53-210ENST00000571456 ART1P52961 327 aa18.42■□□□□ 0.54
VPS53-210ENST00000571456 ZNF239Q16600 458 aaKnown RBP18.42■□□□□ 0.54
VPS53-210ENST00000571456 C1orf140Q5VVS0 124 aa18.42■□□□□ 0.54
VPS53-210ENST00000571456 TTC33Q6PID6 262 aaPredicted RBP18.42■□□□□ 0.54
VPS53-210ENST00000571456 ASRGL1Q7L266 308 aa18.42■□□□□ 0.54
VPS53-210ENST00000571456 MFSD8Q8NHS3 518 aa18.42■□□□□ 0.54
VPS53-210ENST00000571456 CLPTM1LQ96KA5 538 aa18.42■□□□□ 0.54
VPS53-210ENST00000571456 ZNF426Q9BUY5 554 aa18.42■□□□□ 0.54
VPS53-210ENST00000571456 AMBRA1Q9C0C7 1298 aa18.42■□□□□ 0.54
VPS53-210ENST00000571456 RIMS3Q9UJD0 308 aa18.42■□□□□ 0.54
VPS53-210ENST00000571456 TRAV36DV7A0A075B6V5 113 aa18.41■□□□□ 0.54
VPS53-210ENST00000571456 C19orf84I3L1E1 186 aa18.41■□□□□ 0.54
VPS53-210ENST00000571456 FZD7O75084 574 aa18.41■□□□□ 0.54
VPS53-210ENST00000571456 ATP6V1B2P21281 511 aa18.41■□□□□ 0.54
VPS53-210ENST00000571456 SHC1P29353 583 aa18.41■□□□□ 0.54
VPS53-210ENST00000571456 NUP107P57740 925 aa18.41■□□□□ 0.54
VPS53-210ENST00000571456 SMIM11AP58511 58 aa18.41■□□□□ 0.54
VPS53-210ENST00000571456 MS4A2Q01362 244 aa18.41■□□□□ 0.54
VPS53-210ENST00000571456 PMPCAQ10713 525 aa18.41■□□□□ 0.54
VPS53-210ENST00000571456 FLOT2Q14254 428 aa18.41■□□□□ 0.54
VPS53-210ENST00000571456 FAM98BQ52LJ0 330 aaKnown RBP18.41■□□□□ 0.54
VPS53-210ENST00000571456 FAM69AQ5T7M9 428 aa18.41■□□□□ 0.54
VPS53-210ENST00000571456 CYP2R1Q6VVX0 501 aa18.41■□□□□ 0.54
VPS53-210ENST00000571456 RNF217Q8TC41 542 aa18.41■□□□□ 0.54
VPS53-210ENST00000571456 ARL5BQ96KC2 179 aa18.41■□□□□ 0.54
VPS53-210ENST00000571456 ZNF300Q96RE9 604 aaPredicted RBP18.41■□□□□ 0.54
VPS53-210ENST00000571456 ZNF347Q96SE7 839 aa18.41■□□□□ 0.54
VPS53-210ENST00000571456 NAA11Q9BSU3 229 aaPredicted RBP18.41■□□□□ 0.54
VPS53-210ENST00000571456 FNDC11Q9BVV2 318 aa18.41■□□□□ 0.54
VPS53-210ENST00000571456 KLHL4Q9C0H6 718 aa18.41■□□□□ 0.54
VPS53-210ENST00000571456 RNF122Q9H9V4 155 aa18.41■□□□□ 0.54
VPS53-210ENST00000571456 IL1RAPQ9NPH3 570 aa18.41■□□□□ 0.54
VPS53-210ENST00000571456 ZNF629Q9UEG4 869 aaPredicted RBP18.41■□□□□ 0.54
VPS53-210ENST00000571456 SLC7A7Q9UM01 511 aa18.41■□□□□ 0.54
VPS53-210ENST00000571456 POMPQ9Y244 141 aa18.41■□□□□ 0.54
VPS53-210ENST00000571456 INTS1Q8N201 2190 aaKnown RBP18.41■□□□□ 0.54
VPS53-210ENST00000571456 A0A1W2PNR3 127 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 H0YC42 278 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 MT-ATP6P00846 226 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 SEMG1P04279 462 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 CCNA2P20248 432 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 TNFRSF1BP20333 461 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 CHRNB4P30926 498 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 OPRM1P35372 400 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 TPD52P55327 224 aaPredicted RBP18.4■□□□□ 0.54
VPS53-210ENST00000571456 CHRNB3Q05901 458 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 PIN1Q13526 163 aaPredicted RBP18.4■□□□□ 0.54
VPS53-210ENST00000571456 PDK3Q15120 406 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 PAQR6Q6TCH4 344 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 C3P1Q6ZMU1 363 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 PIWIL3Q7Z3Z3 882 aaKnown RBP18.4■□□□□ 0.54
VPS53-210ENST00000571456 MARVELD2Q8N4S9 558 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 OR10Q1Q8NGQ4 319 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 FNDC9Q8TBE3 224 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 RNF128Q8TEB7 428 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 GMPPAQ96IJ6 420 aaPredicted RBP18.4■□□□□ 0.54
VPS53-210ENST00000571456 ZNF845Q96IR2 970 aaPredicted RBP18.4■□□□□ 0.54
VPS53-210ENST00000571456 C7orf34Q96L11 122 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 SFXN3Q9BWM7 321 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 PRR14Q9BWN1 585 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 OR11A1Q9GZK7 315 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 SLC7A8Q9UHI5 535 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 A4GNTQ9UNA3 340 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 CORINQ9Y5Q5 1042 aa18.4■□□□□ 0.54
VPS53-210ENST00000571456 FLNAP21333 2647 aaKnown RBP18.39■□□□□ 0.54
VPS53-210ENST00000571456 JMJD1CQ15652 2540 aa18.39■□□□□ 0.53
VPS53-210ENST00000571456 TCRBV5S2A0A599 114 aa18.39■□□□□ 0.53
VPS53-210ENST00000571456 LIPT2A6NK58 231 aa18.39■□□□□ 0.53
VPS53-210ENST00000571456 DVL2O14641 736 aa18.39■□□□□ 0.53
VPS53-210ENST00000571456 VAMP5O95183 116 aa18.39■□□□□ 0.53
VPS53-210ENST00000571456 OPN1LWP04000 364 aa18.39■□□□□ 0.53
VPS53-210ENST00000571456 FABP3P05413 133 aa18.39■□□□□ 0.53
VPS53-210ENST00000571456 GTF2E2P29084 291 aaKnown RBP18.39■□□□□ 0.53
VPS53-210ENST00000571456 EGR4Q05215 589 aa18.39■□□□□ 0.53
VPS53-210ENST00000571456 TRAM2Q15035 370 aa18.39■□□□□ 0.53
VPS53-210ENST00000571456 SEM1Q6ZVN7 128 aa18.39■□□□□ 0.53
VPS53-210ENST00000571456 FCRLAQ7L513 359 aa18.39■□□□□ 0.53
VPS53-210ENST00000571456 RNF113BQ8IZP6 322 aaKnown RBP18.39■□□□□ 0.53
VPS53-210ENST00000571456 PIGXQ8TBF5 258 aa18.39■□□□□ 0.53
VPS53-210ENST00000571456 NDUFAF4Q9P032 175 aa18.39■□□□□ 0.53
VPS53-210ENST00000571456 KLHL9Q9P2J3 617 aa18.39■□□□□ 0.53
VPS53-210ENST00000571456 ZC3H12DA2A288 527 aaKnown RBP18.38■□□□□ 0.53
VPS53-210ENST00000571456 FAM221AA4D161 298 aa18.38■□□□□ 0.53
VPS53-210ENST00000571456 CIB2O75838 187 aa18.38■□□□□ 0.53
VPS53-210ENST00000571456 LYPD3O95274 346 aa18.38■□□□□ 0.53
VPS53-210ENST00000571456 TGM6O95932 706 aa18.38■□□□□ 0.53
VPS53-210ENST00000571456 TMIGD3P0DMS9 266 aaPredicted RBP18.38■□□□□ 0.53
VPS53-210ENST00000571456 CTSSP25774 331 aa18.38■□□□□ 0.53
VPS53-210ENST00000571456 OR2B6P58173 313 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms