RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 ANKRD16Q6P6B7 361 aa9.59□□□□□ -0.87
VPS53-207ENST00000570510 GOLGA6L1Q8N7Z2 621 aa9.59□□□□□ -0.87
VPS53-207ENST00000570510 OR2T11Q8NH01 316 aa9.59□□□□□ -0.87
VPS53-207ENST00000570510 STON2Q8WXE9 905 aa9.59□□□□□ -0.87
VPS53-207ENST00000570510 MOAP1Q96BY2 351 aa9.59□□□□□ -0.87
VPS53-207ENST00000570510 PPCDCQ96CD2 204 aa9.59□□□□□ -0.87
VPS53-207ENST00000570510 COQ8BQ96D53 544 aa9.59□□□□□ -0.87
VPS53-207ENST00000570510 DNAJA3Q96EY1 480 aa9.59□□□□□ -0.87
VPS53-207ENST00000570510 CCT8L2Q96SF2 557 aa9.59□□□□□ -0.87
VPS53-207ENST00000570510 ESM1Q9NQ30 184 aa9.59□□□□□ -0.87
VPS53-207ENST00000570510 SLC7A10Q9NS82 523 aa9.59□□□□□ -0.87
VPS53-207ENST00000570510 TMEM45AQ9NWC5 275 aa9.59□□□□□ -0.87
VPS53-207ENST00000570510 SLC9A8Q9Y2E8 581 aa9.59□□□□□ -0.87
VPS53-207ENST00000570510 POLR3HQ9Y535 204 aaPredicted RBP9.59□□□□□ -0.87
VPS53-207ENST00000570510 ZNF716A6NP11 495 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 HDAC3O15379 428 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 ZNF264O43296 627 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 OIP5O43482 229 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 SNNO75324 88 aaPredicted RBP9.58□□□□□ -0.88
VPS53-207ENST00000570510 TGDSO95455 350 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 KRT16P08779 473 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 UBL4AP11441 157 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 H2AFXP16104 143 aaPredicted RBP9.58□□□□□ -0.88
VPS53-207ENST00000570510 ADRA2CP18825 462 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 CLDN8P56748 225 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 OR2B6P58173 313 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 NAAAQ02083 359 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 MPP2Q14168 576 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 PRSS53Q2L4Q9 553 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 NDUFAF6Q330K2 333 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 KLHL26Q53HC5 615 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 SLC25A53Q5H9E4 307 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 TSPO2Q5TGU0 170 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 DCAF12L2Q5VW00 463 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 REP15Q6BDI9 236 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 ACSM5Q6NUN0 579 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 CDC73Q6P1J9 531 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 C1QL2Q7Z5L3 287 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 CCDC103Q8IW40 242 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 FNDC5Q8NAU1 212 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 VPS37AQ8NEZ2 397 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 OIT3Q8WWZ8 545 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 TUBGCP3Q96CW5 907 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 ATP6V1G3Q96LB4 118 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 DUX5Q96PT3 197 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 DOK1Q99704 481 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 MEAF6Q9HAF1 191 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 MOV10Q9HCE1 1003 aaKnown RBP9.58□□□□□ -0.88
VPS53-207ENST00000570510 PRDM4Q9UKN5 801 aa9.58□□□□□ -0.88
VPS53-207ENST00000570510 OR6C65A6NJZ3 312 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 PDLIM1O00151 329 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 SCAMP2O15127 329 aaKnown RBP9.57□□□□□ -0.88
VPS53-207ENST00000570510 EIF4E2O60573 245 aaKnown RBP9.57□□□□□ -0.88
VPS53-207ENST00000570510 PRSS23O95084 383 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 MPZL1O95297 269 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 ACHEP22303 614 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 PRTN3P24158 256 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 ARRB2P32121 409 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 THBS4P35443 961 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 MAP3K8P41279 467 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 CLNS1AP54105 237 aaKnown RBP9.57□□□□□ -0.88
VPS53-207ENST00000570510 WDR4P57081 412 aaKnown RBP9.57□□□□□ -0.88
VPS53-207ENST00000570510 TMEM33P57088 247 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 RPL38P63173 70 aaKnown RBP9.57□□□□□ -0.88
VPS53-207ENST00000570510 ZP4Q12836 540 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 SLC9B1Q4ZJI4 515 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 FAM219BQ5XKK7 198 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 ZCCHC23Q6ZST2 131 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 RIMKLAQ8IXN7 391 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 POMGNT2Q8NAT1 580 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 NUP37Q8NFH4 326 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 OR8J2Q8NGG1 315 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 ZNF563Q8TA94 476 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 OR5P2Q8WZ92 322 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 ST8SIA1Q92185 356 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 RDH5Q92781 318 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 CDS1Q92903 461 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 SLC25A28Q96A46 364 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 TESCQ96BS2 214 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 C16orf58Q96GQ5 468 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 SORT1Q99523 831 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 NAA11Q9BSU3 229 aaPredicted RBP9.57□□□□□ -0.88
VPS53-207ENST00000570510 THUMPD3Q9BV44 507 aaKnown RBP9.57□□□□□ -0.88
VPS53-207ENST00000570510 SLITRK2Q9H156 845 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 MS4A5Q9H3V2 200 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 ZNF442Q9H7R0 627 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 ZMAT3Q9HA38 289 aaKnown RBP9.57□□□□□ -0.88
VPS53-207ENST00000570510 REV1Q9UBZ9 1251 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 CMAHPQ9Y471 501 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 DTNAQ9Y4J8 743 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 VWFP04275 2813 aa9.57□□□□□ -0.88
VPS53-207ENST00000570510 J3QLI3 93 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 M0R233 179 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 RNASET2O00584 256 aaKnown RBP9.56□□□□□ -0.88
VPS53-207ENST00000570510 DNPH1O43598 174 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 SYNGR3O43761 229 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 EIF1BO60739 113 aaKnown RBP9.56□□□□□ -0.88
VPS53-207ENST00000570510 PEX11AO75192 247 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 PMS2P2O95744 297 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 AVPP01185 164 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms