RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 OR5B2Q96R09 309 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 TTYH2Q9BSA4 534 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 SLC19A3Q9BZV2 496 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 TRIM15Q9C019 465 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 EXO5Q9H790 373 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 AURKCQ9UQB9 309 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 MEMO1Q9Y316 297 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 HDGFL3Q9Y3E1 203 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 ZNF175Q9Y473 711 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 DCHS2Q6V1P9 2916 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 HRNRQ86YZ3 2850 aaPredicted RBP8.3□□□□□ -1.08
VPS35-211ENST00000569950 CENPEQ02224 2701 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 ANKHD1Q8IWZ3 2542 aaKnown RBP8.29□□□□□ -1.08
VPS35-211ENST00000569950 TRAV36DV7A0A075B6V5 113 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 ENO4A6NNW6 628 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 H0Y3Z8 333 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 WDR1O75083 606 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 TP53P04637 393 aaPredicted RBP8.29□□□□□ -1.08
VPS35-211ENST00000569950 ASAH2BP0C7U1 165 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 FPR1P21462 350 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 EIF1AXP47813 144 aaKnown RBP8.29□□□□□ -1.08
VPS35-211ENST00000569950 NUP107P57740 925 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 RPS4XP62701 263 aaKnown RBP8.29□□□□□ -1.08
VPS35-211ENST00000569950 PRKCDQ05655 676 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 FOXF2Q12947 444 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 TRAM2Q15035 370 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 PON3Q15166 354 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 EXOC3L2Q2M3D2 409 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 FAM69AQ5T7M9 428 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 WLSQ5T9L3 541 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 ZNF585AQ6P3V2 769 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 MBOAT2Q6ZWT7 520 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 ZER1Q7Z7L7 766 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 CCDC103Q8IW40 242 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 NRMQ8IXM6 262 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 PM20D2Q8IYS1 436 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 MEIOBQ8N635 442 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 TMEM99Q8N816 258 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 ZIC4Q8N9L1 334 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 OR52J3Q8NH60 311 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 ROBO4Q8WZ75 1007 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 POP5Q969H6 163 aaKnown RBP8.29□□□□□ -1.08
VPS35-211ENST00000569950 ZNF347Q96SE7 839 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 FNDC11Q9BVV2 318 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 ENKD1Q9H0I2 346 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 TP63Q9H3D4 680 aaPredicted RBP8.29□□□□□ -1.08
VPS35-211ENST00000569950 RNF122Q9H9V4 155 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 CALHM2Q9HA72 323 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 SERINC1Q9NRX5 453 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 RPS6KB2Q9UBS0 482 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 ERRFI1Q9UJM3 462 aaPredicted RBP8.29□□□□□ -1.08
VPS35-211ENST00000569950 MAGED1Q9Y5V3 778 aaPredicted RBP8.29□□□□□ -1.08
VPS35-211ENST00000569950 ICE1Q9Y2F5 2266 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 DOPEY2Q9Y3R5 2298 aa8.29□□□□□ -1.08
VPS35-211ENST00000569950 IGKV3D-15A0A087WSY6 115 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 A0A0G2JNJ9 132 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 WIPF3A6NGB9 483 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 AQP7P3A6NL99 342 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 GJE1A6NN92 205 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 E9PLN8 166 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 MS4A18H0YCH9 400 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 M0R082 166 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 SULT2B1O00204 365 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 KPNA4O00629 521 aaPredicted RBP8.28□□□□□ -1.08
VPS35-211ENST00000569950 DNPH1O43598 174 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 CYTIPO60759 359 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 CIB2O75838 187 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 TNFSF13O75888 250 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 KRT36O76013 467 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 GADD45GO95257 159 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 TFPIP10646 304 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 ITGA2P17301 1181 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 CBLP22681 906 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 FKBP2P26885 142 aaKnown RBP8.28□□□□□ -1.08
VPS35-211ENST00000569950 GRPRP30550 384 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 UQCRC1P31930 480 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 IDUAP35475 653 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 GSSP48637 474 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 SLC16A1P53985 500 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 CARD18P57730 90 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 SPIBQ01892 262 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 OR7A5Q15622 319 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 ATP6AP1Q15904 470 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.28□□□□□ -1.08
VPS35-211ENST00000569950 MS4A18Q3C1V0 323 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 CRYBG3Q68DQ2 2970 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 PGBD2Q6P3X8 592 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 PAQR6Q6TCH4 344 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 C5orf46Q6UWT4 87 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 TMPRSS11FQ6ZWK6 438 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 LIX1LQ8IVB5 337 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 LRRC75AQ8NAA5 344 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 OR4K5Q8NGD3 323 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 ZNF417Q8TAU3 575 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 ABHD3Q8WU67 409 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 LRTOMTQ8WZ04 291 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 WNT2BQ93097 391 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 DDIT4LQ96D03 193 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 CCDC120Q96HB5 630 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 HS6ST2Q96MM7 605 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms