RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 NDUFS8O00217 210 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 SLC19A2O60779 497 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 VAMP5O95183 116 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 CEACAM6P40199 344 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 MC3RP41968 323 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 MVDP53602 400 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 SOX8P57073 446 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 UBE2MP61081 183 aaKnown RBP10.02□□□□□ -0.81
CLK3-226ENST00000569406 MAP4K2Q12851 820 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 OR5I1Q13606 314 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 PNLIPRP3Q17RR3 467 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 NKAPLQ5M9Q1 402 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 NCEH1Q6PIU2 408 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 Q6ZNB5 142 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 DCXRQ7Z4W1 244 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 STK40Q8N2I9 435 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 SLC5A8Q8N695 610 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 SIDT2Q8NBJ9 832 aaKnown RBP10.02□□□□□ -0.81
CLK3-226ENST00000569406 NOL4LQ96MY1 436 aaPredicted RBP10.02□□□□□ -0.81
CLK3-226ENST00000569406 DIRC2Q96SL1 478 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 MESP1Q9BRJ9 268 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 PCTPQ9UKL6 214 aa10.02□□□□□ -0.81
CLK3-226ENST00000569406 SAMD4AQ9UPU9 718 aaKnown RBP10.02□□□□□ -0.81
CLK3-226ENST00000569406 HELZP42694 1942 aaKnown RBP10.02□□□□□ -0.81
CLK3-226ENST00000569406 A0A0U1RQV5 110 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 MCIDASD6RGH6 385 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 K7ERQ8 282 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 GMFGO60234 142 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 CREBL2O60519 120 aaPredicted RBP10.01□□□□□ -0.81
CLK3-226ENST00000569406 FKTNO75072 461 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 ENTPD6O75354 484 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 SPARCP09486 303 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 IL2P60568 153 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 KHDC3LQ587J8 217 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 TRIM46Q7Z4K8 759 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 MARCH9Q86YJ5 346 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 BEND2Q8NDZ0 799 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 NEIL3Q8TAT5 605 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 NUDT11Q96G61 164 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 NECAB3Q96P71 396 aaPredicted RBP10.01□□□□□ -0.81
CLK3-226ENST00000569406 OR14A2Q96R54 314 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 OR52E6Q96RD3 313 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 METTL8Q9H825 291 aaKnown RBP10.01□□□□□ -0.81
CLK3-226ENST00000569406 SFXN1Q9H9B4 322 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 IL21Q9HBE4 155 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 RLIMQ9NVW2 624 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 GSKIPQ9P0R6 139 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 HMSDA8MTL9 139 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 NPIPB8E9PQR5 432 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 BCAT2O15382 392 aaPredicted RBP10.01□□□□□ -0.81
CLK3-226ENST00000569406 ITGA5P08648 1049 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 LAMP1P11279 417 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 GDF5P43026 501 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 DHPSP49366 369 aaPredicted RBP10.01□□□□□ -0.81
CLK3-226ENST00000569406 MRPL19P49406 292 aaKnown RBP10.01□□□□□ -0.81
CLK3-226ENST00000569406 MLLT11Q13015 90 aaPredicted RBP10.01□□□□□ -0.81
CLK3-226ENST00000569406 ATXN7L3Q14CW9 347 aaPredicted RBP10.01□□□□□ -0.81
CLK3-226ENST00000569406 C18orf21Q32NC0 220 aaPredicted RBP10.01□□□□□ -0.81
CLK3-226ENST00000569406 ZNF621Q6ZSS3 439 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 SSX7Q7RTT5 188 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 GTPBP8Q8N3Z3 284 aaPredicted RBP10.01□□□□□ -0.81
CLK3-226ENST00000569406 ACBD4Q8NC06 268 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 OR2A12Q8NGT7 310 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 OR6K2Q8NGY2 324 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 EEF1AKMT1Q8WVE0 214 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 OVCA2Q8WZ82 227 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 C7orf34Q96L11 122 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 ZNF354BQ96LW1 612 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 DNAJC4Q9NNZ3 241 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 CTPS2Q9NRF8 586 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 SNX11Q9Y5W9 270 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 NOTCH4Q99466 2003 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 CPED1A4D0V7 1026 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 WNT1P04628 370 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 MPGP29372 298 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 RPL3P39023 403 aaKnown RBP10.01□□□□□ -0.81
CLK3-226ENST00000569406 AFF3P51826 1226 aaKnown RBP10.01□□□□□ -0.81
CLK3-226ENST00000569406 TLE4Q04727 773 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 ZP2Q05996 745 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 DCAF10Q5QP82 559 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 KHDRBS2Q5VWX1 349 aaKnown RBP10.01□□□□□ -0.81
CLK3-226ENST00000569406 FAHD1Q6P587 224 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 CHST9Q7L1S5 443 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 ADPRHL1Q8NDY3 354 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 SPPL2AQ8TCT8 520 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 RRNAD1Q96FB5 475 aaKnown RBP10.01□□□□□ -0.81
CLK3-226ENST00000569406 CMTM7Q96FZ5 175 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 RCC1LQ96I51 464 aaKnown RBP10.01□□□□□ -0.81
CLK3-226ENST00000569406 ACKR4Q9NPB9 350 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 TMEM138Q9NPI0 162 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 CNOT2Q9NZN8 540 aaKnown RBP10.01□□□□□ -0.81
CLK3-226ENST00000569406 RAI2Q9Y5P3 530 aa10.01□□□□□ -0.81
CLK3-226ENST00000569406 SMCO3A2RU48 225 aa10□□□□□ -0.81
CLK3-226ENST00000569406 TBC1D3FA6NER0 549 aaPredicted RBP10□□□□□ -0.81
CLK3-226ENST00000569406 SLC28A2O43868 658 aa10□□□□□ -0.81
CLK3-226ENST00000569406 CLDN11O75508 207 aa10□□□□□ -0.81
CLK3-226ENST00000569406 F13BP05160 661 aa10□□□□□ -0.81
CLK3-226ENST00000569406 EIF4EP06730 217 aaKnown RBP10□□□□□ -0.81
CLK3-226ENST00000569406 FGF7P21781 194 aa10□□□□□ -0.81
CLK3-226ENST00000569406 DGCR2P98153 550 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms