RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 IL12BP29460 328 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 ACVR1BP36896 505 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 ARRB1P49407 418 aaPredicted RBP18.48■□□□□ 0.55
CLN3-230ENST00000568076 DIO1P49895 249 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 TP53I3Q53FA7 332 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 SHISA6Q6ZSJ9 500 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 MARCH3Q86UD3 253 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 POMGNT2Q8NAT1 580 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 OR1N1Q8NGS0 311 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 ITPKCQ96DU7 683 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 KTI12Q96EK9 354 aaPredicted RBP18.48■□□□□ 0.55
CLN3-230ENST00000568076 NEDD4LQ96PU5 975 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 ADAM19Q9H013 955 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 COLQQ9Y215 455 aaPredicted RBP18.48■□□□□ 0.55
CLN3-230ENST00000568076 PCDHGB2Q9Y5G2 931 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 TEX13CA0A0J9YWL9 993 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 SNPHO15079 494 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 TMCC2O75069 709 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 OR2T7P0C7T2 308 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 ASAH2BP0C7U1 165 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 F8A1P23610 371 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 TACR3P29371 465 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 PON3Q15166 354 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 TAB1Q15750 504 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 TOMM34Q15785 309 aaPredicted RBP18.48■□□□□ 0.55
CLN3-230ENST00000568076 YOD1Q5VVQ6 348 aaPredicted RBP18.48■□□□□ 0.55
CLN3-230ENST00000568076 CNIH2Q6PI25 160 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 LYPD4Q6UWN0 246 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 FAM122BQ7Z309 247 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 SLC35F2Q8IXU6 374 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 C10orf53Q8N6V4 93 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 ZNF441Q8N8Z8 693 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 GDPD1Q8N9F7 314 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 OR2T27Q8NH04 317 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 ZNF563Q8TA94 476 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 ABHD4Q8TB40 342 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 Q96M85 177 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 NANSQ9NR45 359 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 COPS3Q9UNS2 423 aa18.48■□□□□ 0.55
CLN3-230ENST00000568076 HTR3EA5X5Y0 456 aa18.47■□□□□ 0.55
CLN3-230ENST00000568076 AGRPO00253 132 aa18.47■□□□□ 0.55
CLN3-230ENST00000568076 IDH3BO43837 385 aa18.47■□□□□ 0.55
CLN3-230ENST00000568076 SELENOFO60613 162 aa18.47■□□□□ 0.55
CLN3-230ENST00000568076 WISP1O95388 367 aa18.47■□□□□ 0.55
CLN3-230ENST00000568076 CDKN2AP42771 156 aaKnown RBP18.47■□□□□ 0.55
CLN3-230ENST00000568076 PLCXD2Q0VAA5 305 aa18.47■□□□□ 0.55
CLN3-230ENST00000568076 LCN1P1Q5VSP4 162 aa18.47■□□□□ 0.55
CLN3-230ENST00000568076 HLA-DQA1Q5Y7H0 255 aa18.47■□□□□ 0.55
CLN3-230ENST00000568076 IL17RDQ8NFM7 739 aa18.47■□□□□ 0.55
CLN3-230ENST00000568076 KIAA1143Q96AT1 154 aaPredicted RBP18.47■□□□□ 0.55
CLN3-230ENST00000568076 PELI1Q96FA3 418 aa18.47■□□□□ 0.55
CLN3-230ENST00000568076 TXNDC15Q96J42 360 aa18.47■□□□□ 0.55
CLN3-230ENST00000568076 PPP1R3EQ9H7J1 279 aa18.47■□□□□ 0.55
CLN3-230ENST00000568076 MPDZO75970 2070 aa18.47■□□□□ 0.55
CLN3-230ENST00000568076 HCRTR2O43614 444 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 SERPINI2O75830 405 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 APEX1P27695 318 aaKnown RBP18.46■□□□□ 0.55
CLN3-230ENST00000568076 ABCD3P28288 659 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 LCN1P31025 176 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 CDONQ4KMG0 1287 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 PYDC2Q56P42 97 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 LEG1Q6P5S2 330 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 TMEM71Q6P5X7 295 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 KANSL1Q7Z3B3 1105 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 CEACAM19Q7Z692 300 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 PXKQ7Z7A4 578 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 OR13C5Q8NGS8 318 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 GHSRQ92847 366 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 OMA1Q96E52 524 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 LPAR4Q99677 370 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 MESP1Q9BRJ9 268 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 COPS7AQ9UBW8 275 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 LY6G6EA0A0G2JKS1 128 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 LINC00854A0A1B0GVQ3 168 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 ALG1L2C9J202 215 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 SEC14L5O43304 696 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 CFL1P23528 166 aaKnown RBP18.46■□□□□ 0.55
CLN3-230ENST00000568076 EPHA8P29322 1005 aaPredicted RBP18.46■□□□□ 0.55
CLN3-230ENST00000568076 UQCRC1P31930 480 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 EVX1P49640 407 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 LGALS3BPQ08380 585 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 SLC35D3Q5M8T2 416 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 LINC01590Q5TEZ4 76 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 LYSMD4Q5XG99 296 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 GUSBP11Q6P575 273 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 SYS1Q8N2H4 156 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 SLC38A9Q8NBW4 561 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 PLPP5Q8NEB5 264 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 TAAR8Q969N4 342 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 FSCN3Q9NQT6 498 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 MALT1Q9UDY8 824 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 U3KQA8 63 aa18.46■□□□□ 0.55
CLN3-230ENST00000568076 IGHV3-20A0A0C4DH32 117 aa18.45■□□□□ 0.54
CLN3-230ENST00000568076 A0A1W2PQD3 144 aa18.45■□□□□ 0.54
CLN3-230ENST00000568076 FAM171A2A8MVW0 826 aa18.45■□□□□ 0.54
CLN3-230ENST00000568076 CD14P08571 375 aa18.45■□□□□ 0.54
CLN3-230ENST00000568076 FOSL2P15408 326 aa18.45■□□□□ 0.54
CLN3-230ENST00000568076 CAPZA2P47755 286 aa18.45■□□□□ 0.54
CLN3-230ENST00000568076 SLC6A8P48029 635 aa18.45■□□□□ 0.54
CLN3-230ENST00000568076 DHPSP49366 369 aaPredicted RBP18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms