RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 C1QTNF12Q5T7M4 302 aa14.09□□□□□ -0.15
CLN3-229ENST00000567963 WBP2NLQ6ICG8 309 aa14.09□□□□□ -0.15
CLN3-229ENST00000567963 B3GLCTQ6Y288 498 aa14.09□□□□□ -0.15
CLN3-229ENST00000567963 OR10H5Q8NGA6 315 aa14.09□□□□□ -0.15
CLN3-229ENST00000567963 OR9K2Q8NGE7 335 aa14.09□□□□□ -0.15
CLN3-229ENST00000567963 ZNF385AQ96PM9 386 aaKnown RBP14.09□□□□□ -0.15
CLN3-229ENST00000567963 PIF1Q9H611 641 aa14.09□□□□□ -0.15
CLN3-229ENST00000567963 MANSC1Q9H8J5 431 aa14.09□□□□□ -0.15
CLN3-229ENST00000567963 SDR39U1Q9NRG7 319 aaPredicted RBP14.09□□□□□ -0.15
CLN3-229ENST00000567963 ZIM2Q9NZV7 527 aa14.09□□□□□ -0.15
CLN3-229ENST00000567963 AMDHD2Q9Y303 409 aa14.09□□□□□ -0.15
CLN3-229ENST00000567963 SONP18583 2426 aaKnown RBP14.08□□□□□ -0.15
CLN3-229ENST00000567963 IGHV4-30-2A0A087WSY4 118 aa14.08□□□□□ -0.16
CLN3-229ENST00000567963 DSTNP60981 165 aa14.08□□□□□ -0.16
CLN3-229ENST00000567963 COPZ1P61923 177 aa14.08□□□□□ -0.16
CLN3-229ENST00000567963 SLC25A3Q00325 362 aa14.08□□□□□ -0.16
CLN3-229ENST00000567963 RAB35Q15286 201 aa14.08□□□□□ -0.16
CLN3-229ENST00000567963 RNF220Q5VTB9 566 aa14.08□□□□□ -0.16
CLN3-229ENST00000567963 TMEM225Q6GV28 225 aa14.08□□□□□ -0.16
CLN3-229ENST00000567963 ZNF544Q6NX49 715 aa14.08□□□□□ -0.16
CLN3-229ENST00000567963 AAED1Q7RTV5 226 aa14.08□□□□□ -0.16
CLN3-229ENST00000567963 GPAT4Q86UL3 456 aa14.08□□□□□ -0.16
CLN3-229ENST00000567963 CLIP4Q8N3C7 705 aa14.08□□□□□ -0.16
CLN3-229ENST00000567963 CADM2Q8N3J6 435 aa14.08□□□□□ -0.16
CLN3-229ENST00000567963 BOD1Q96IK1 185 aa14.08□□□□□ -0.16
CLN3-229ENST00000567963 RMND5AQ9H871 391 aa14.08□□□□□ -0.16
CLN3-229ENST00000567963 THUMPD1Q9NXG2 353 aaKnown RBP14.08□□□□□ -0.16
CLN3-229ENST00000567963 ZNF232Q9UNY5 417 aa14.08□□□□□ -0.16
CLN3-229ENST00000567963 ZNF443Q9Y2A4 671 aaPredicted RBP14.08□□□□□ -0.16
CLN3-229ENST00000567963 CHST2Q9Y4C5 530 aa14.08□□□□□ -0.16
CLN3-229ENST00000567963 A0A0G2JPF8 293 aa14.07□□□□□ -0.16
CLN3-229ENST00000567963 A8MVM7 634 aa14.07□□□□□ -0.16
CLN3-229ENST00000567963 HNRNPCL2B2RXH8 293 aa14.07□□□□□ -0.16
CLN3-229ENST00000567963 HNRNPCL3B7ZW38 293 aa14.07□□□□□ -0.16
CLN3-229ENST00000567963 HNRNPCL1O60812 293 aaKnown RBP14.07□□□□□ -0.16
CLN3-229ENST00000567963 HNRNPCL4P0DMR1 293 aa14.07□□□□□ -0.16
CLN3-229ENST00000567963 PRG2P13727 222 aa14.07□□□□□ -0.16
CLN3-229ENST00000567963 P2RY4P51582 365 aa14.07□□□□□ -0.16
CLN3-229ENST00000567963 DSCR9P59020 149 aa14.07□□□□□ -0.16
CLN3-229ENST00000567963 PRPS1P60891 318 aa14.07□□□□□ -0.16
CLN3-229ENST00000567963 LARS2Q15031 903 aaKnown RBP14.07□□□□□ -0.16
CLN3-229ENST00000567963 ZSWIM7Q19AV6 140 aa14.07□□□□□ -0.16
CLN3-229ENST00000567963 GTDC1Q4AE62 458 aa14.07□□□□□ -0.16
CLN3-229ENST00000567963 MSANTD1Q6ZTZ1 278 aa14.07□□□□□ -0.16
CLN3-229ENST00000567963 MAVSQ7Z434 540 aa14.07□□□□□ -0.16
CLN3-229ENST00000567963 POMGNT2Q8NAT1 580 aa14.07□□□□□ -0.16
CLN3-229ENST00000567963 HTRA1Q92743 480 aa14.07□□□□□ -0.16
CLN3-229ENST00000567963 VPS33AQ96AX1 596 aa14.07□□□□□ -0.16
CLN3-229ENST00000567963 AURKBQ96GD4 344 aaPredicted RBP14.07□□□□□ -0.16
CLN3-229ENST00000567963 ITCHQ96J02 903 aa14.07□□□□□ -0.16
CLN3-229ENST00000567963 TAPBPLQ9BX59 468 aa14.07□□□□□ -0.16
CLN3-229ENST00000567963 FKRPQ9H9S5 495 aa14.07□□□□□ -0.16
CLN3-229ENST00000567963 ADPRHL2Q9NX46 363 aa14.07□□□□□ -0.16
CLN3-229ENST00000567963 A0A096LNT2 108 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 FAM234BA2RU67 622 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 H7C417 338 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 UBDO15205 165 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 GPRIN2O60269 458 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 WNT11O96014 354 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 CDH2P19022 906 aaPredicted RBP14.06□□□□□ -0.16
CLN3-229ENST00000567963 APOBEC3AP31941 199 aaPredicted RBP14.06□□□□□ -0.16
CLN3-229ENST00000567963 POLR2JP52435 117 aaKnown RBP14.06□□□□□ -0.16
CLN3-229ENST00000567963 MAGOHP61326 146 aaKnown RBP14.06□□□□□ -0.16
CLN3-229ENST00000567963 RPS26P11Q5JNZ5 115 aaPredicted RBP14.06□□□□□ -0.16
CLN3-229ENST00000567963 CLEC2AQ6UVW9 174 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 OR9I1Q8NGQ6 314 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 TMEM19Q96HH6 336 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 OR52B2Q96RD2 323 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 SPATA9Q9BWV2 254 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 ARMC7Q9H6L4 198 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 YAE1D1Q9NRH1 226 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 IFT52Q9Y366 437 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 PCDHB14Q9Y5E9 798 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 ATP23Q9Y6H3 246 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 A0A096LPI6 279 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 TMEM247A6NEH6 219 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 FRS3O43559 492 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 NPIPB7O75200 414 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 VAMP5O95183 116 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 NCF2P19878 526 aaPredicted RBP14.06□□□□□ -0.16
CLN3-229ENST00000567963 RGNQ15493 299 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 HIKESHIQ53FT3 197 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 C6orf10Q5SRN2 563 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 C1orf140Q5VVS0 124 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 CREB3L2Q70SY1 520 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 CXXC5Q7LFL8 322 aaKnown RBP14.06□□□□□ -0.16
CLN3-229ENST00000567963 ABHD12BQ7Z5M8 362 aaPredicted RBP14.06□□□□□ -0.16
CLN3-229ENST00000567963 SERPINA11Q86U17 422 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 HIPK1Q86Z02 1210 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 GTF2H4Q92759 462 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 C3orf49Q96BT1 292 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 NKIRAS1Q9NYS0 192 aa14.06□□□□□ -0.16
CLN3-229ENST00000567963 RTTNQ86VV8 2226 aa14.05□□□□□ -0.16
CLN3-229ENST00000567963 YLPM1P49750 1951 aaKnown RBP14.05□□□□□ -0.16
CLN3-229ENST00000567963 ELOA3DA6NLF2 546 aaPredicted RBP14.05□□□□□ -0.16
CLN3-229ENST00000567963 KRT33AO76009 404 aa14.05□□□□□ -0.16
CLN3-229ENST00000567963 BMP4P12644 408 aa14.05□□□□□ -0.16
CLN3-229ENST00000567963 SELENOPP49908 381 aa14.05□□□□□ -0.16
CLN3-229ENST00000567963 ELOA3BQ3SY89 546 aa14.05□□□□□ -0.16
CLN3-229ENST00000567963 ZNF311Q5JNZ3 666 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms