RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 MAGEB18Q96M61 343 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 CCT7Q99832 543 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 RNF126Q9BV68 326 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 KRTAP4-3Q9BYR4 195 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 API5Q9BZZ5 524 aaKnown RBP3.39□□□□□ -1.87
LINC00560-201ENST00000564593 PHF11Q9UIL8 331 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 TTC21BQ7Z4L5 1316 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 IGHV1OR15-1A0A075B7D0 117 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 RIPK2O43353 540 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 OR10H3O60404 316 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 LY6G6DO95868 133 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 PCMT1P22061 227 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 LEPP41159 167 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 TNNT2P45379 298 aaPredicted RBP3.38□□□□□ -1.87
LINC00560-201ENST00000564593 DAP3P51398 398 aaKnown RBP3.38□□□□□ -1.87
LINC00560-201ENST00000564593 PLK1P53350 603 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 FGL1Q08830 312 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 C1orf61Q13536 156 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 IDI1Q13907 227 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 ELAVL3Q14576 367 aaKnown RBP3.38□□□□□ -1.87
LINC00560-201ENST00000564593 RNF212Q495C1 297 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 CENPPQ6IPU0 288 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 KDELC1Q6UW63 502 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 ZNF589Q86UQ0 364 aaPredicted RBP3.38□□□□□ -1.87
LINC00560-201ENST00000564593 PPP1R27Q86WC6 154 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 ITPRIPQ8IWB1 547 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 CEND1Q8N111 149 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 SVOPLQ8N434 492 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 RAPGEF5Q92565 580 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 B3GALT6Q96L58 329 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 ZNF670Q9BS34 389 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 LRRN3Q9H3W5 708 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 POPDC2Q9HBU9 364 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 SMOXQ9NWM0 555 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 TMEM9Q9P0T7 183 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 EXTL2Q9UBQ6 330 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 CLEC4AQ9UMR7 237 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 CPSF1Q10570 1443 aaKnown RBP3.38□□□□□ -1.87
LINC00560-201ENST00000564593 FRMPD3Q5JV73 1810 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 CD163L1Q9NR16 1453 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 PIK3R4Q99570 1358 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 FAM208AQ9UK61 1670 aaKnown RBP3.38□□□□□ -1.87
LINC00560-201ENST00000564593 ZNF208O43345 1280 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 CXCL13O43927 109 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 HMMRO75330 724 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 LYPD3O95274 346 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 CCDC130P13994 396 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 ANXA13P27216 316 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 GCAP28676 217 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 RGRP47804 291 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 HNRNPA3P51991 378 aaKnown RBP3.38□□□□□ -1.87
LINC00560-201ENST00000564593 AIF1P55008 147 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 CCDC173Q0VFZ6 552 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 ZSCAN25Q6NSZ9 544 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 WDR74Q6RFH5 385 aaPredicted RBP3.38□□□□□ -1.87
LINC00560-201ENST00000564593 Q6ZPB1 254 aaPredicted RBP3.38□□□□□ -1.87
LINC00560-201ENST00000564593 ARCQ7LC44 396 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 NLRP9Q7RTR0 991 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 TMEM179BQ7Z7N9 219 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 SLC35F2Q8IXU6 374 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 C14orf178Q8N769 122 aaPredicted RBP3.38□□□□□ -1.87
LINC00560-201ENST00000564593 OR9A1PQ8NGU1 263 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 OR56B4Q8NH76 319 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 ANP32BQ92688 251 aaKnown RBP3.38□□□□□ -1.87
LINC00560-201ENST00000564593 PSKH2Q96QS6 385 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 NPAS2Q99743 824 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 TMEM43Q9BTV4 400 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 YTHDF1Q9BYJ9 559 aaKnown RBP3.38□□□□□ -1.87
LINC00560-201ENST00000564593 LRRC40Q9H9A6 602 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 TIMM10BQ9Y5J6 103 aa3.38□□□□□ -1.87
LINC00560-201ENST00000564593 RGPD1P0DJD0 1748 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 TTC21AQ8NDW8 1320 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 ARHGEF10O15013 1369 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 KIAA0232Q92628 1395 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 ANKARQ7Z5J8 1434 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 TRAV26-1A0A087WT03 109 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 A0A1B0GUS0 222 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 F5H6K3 240 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 K7N7A8 449 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 MPHOSPH10O00566 681 aaKnown RBP3.37□□□□□ -1.87
LINC00560-201ENST00000564593 ZNF264O43296 627 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 DBTP11182 482 aaKnown RBP3.37□□□□□ -1.87
LINC00560-201ENST00000564593 AQP1P29972 269 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 GRIA1P42261 906 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 CASP4P49662 377 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 STX17P56962 302 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 RIPPLY3P57055 190 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 KLRC3Q07444 240 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 NCBP1Q09161 790 aaKnown RBP3.37□□□□□ -1.87
LINC00560-201ENST00000564593 ZNF100Q8IYN0 542 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 ZNF679Q8IYX0 411 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 ZCCHC7Q8N3Z6 543 aaKnown RBP3.37□□□□□ -1.87
LINC00560-201ENST00000564593 CATSPER1Q8NEC5 780 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 ZNF564Q8TBZ8 553 aaPredicted RBP3.37□□□□□ -1.87
LINC00560-201ENST00000564593 MARC2Q969Z3 335 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 EFHD2Q96C19 240 aaPredicted RBP3.37□□□□□ -1.87
LINC00560-201ENST00000564593 C16orf74Q96GX8 76 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 COQ2Q96H96 371 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 PGLYRP4Q96LB8 373 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 RBM14Q96PK6 669 aaKnown RBP3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms