RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 OLAHQ9NV23 265 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 CADP27708 2225 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 CHD5Q8TDI0 1954 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 TRBV2A0A0J9YWF9 115 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 KHDRBS3O75525 346 aaKnown RBP8.45□□□□□ -1.06
VPS39-205ENST00000562258 ELAVL4P26378 380 aaKnown RBP8.45□□□□□ -1.06
VPS39-205ENST00000562258 MSX1P28360 303 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 PRICKLE4Q2TBC4 344 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 TP53I3Q53FA7 332 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 ZNF687Q8N1G0 1237 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 PACRGLQ8N7B6 248 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 MCFD2Q8NI22 146 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 SLC6A15Q9H2J7 730 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 UCK1Q9HA47 277 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 A4GALTQ9NPC4 353 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 C21orf140B9A014 251 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 CYR61O00622 381 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 TNFSF11O14788 317 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 EIF4E2O60573 245 aaKnown RBP8.45□□□□□ -1.06
VPS39-205ENST00000562258 CBX7O95931 251 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 TFPTP0C1Z6 253 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 CD59P13987 128 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 IFNGR1P15260 489 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 PSMB10P40306 273 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 RPS27P42677 84 aaKnown RBP8.45□□□□□ -1.06
VPS39-205ENST00000562258 MAP2K4P45985 399 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 RIDAP52758 137 aaKnown RBP8.45□□□□□ -1.06
VPS39-205ENST00000562258 LINC00346Q8IVM7 164 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 GID4Q8IVV7 300 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 ZCCHC14Q8WYQ9 949 aaKnown RBP8.45□□□□□ -1.06
VPS39-205ENST00000562258 ANKRD9Q96BM1 317 aaPredicted RBP8.45□□□□□ -1.06
VPS39-205ENST00000562258 MED18Q9BUE0 208 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 FN3KQ9H479 309 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 TAS2R7Q9NYW3 318 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 ADAM18Q9Y3Q7 739 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 PCDHGB1Q9Y5G3 927 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 GPC6Q9Y625 555 aaPredicted RBP8.45□□□□□ -1.06
VPS39-205ENST00000562258 TMEM14AQ9Y6G1 99 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 CDH10Q9Y6N8 788 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 ZGRF1Q86YA3 2104 aa8.45□□□□□ -1.06
VPS39-205ENST00000562258 TRAV36DV7A0A075B6V5 113 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 A0A087WUU8 490 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 FRG2CA6NGY1 282 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 LOC110117498-PIK3R3F6TDL0 507 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 GPR171O14626 319 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 CRABP1P29762 137 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 TTKP33981 857 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 APLNRP35414 380 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 CXCR4P61073 352 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 CRMP1Q14194 572 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 SYT14P1Q58G82 188 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 C6orf141Q5SZD1 244 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 C11orf88Q6PI97 169 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 KIRREL2Q6UWL6 708 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 SLCO6A1Q86UG4 719 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 TMEM99Q8N816 258 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 OR4C15Q8NGM1 316 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 APH1AQ96BI3 265 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 RASD2Q96D21 266 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 C11orf24Q96F05 449 aaPredicted RBP8.44□□□□□ -1.06
VPS39-205ENST00000562258 TMEM80Q96HE8 168 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 PRMT8Q9NR22 394 aaPredicted RBP8.44□□□□□ -1.06
VPS39-205ENST00000562258 ABCB10Q9NRK6 738 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 PCDHGA3Q9Y5H0 932 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 CLCA1A8K7I4 914 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 LGI1O95970 557 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 PMP22Q01453 160 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 PUDPQ08623 228 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 MALLQ13021 153 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 MYBPHQ13203 477 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 RSBN1Q5VWQ0 802 aaPredicted RBP8.44□□□□□ -1.06
VPS39-205ENST00000562258 MZT2AQ6P582 158 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 BCDIN3DQ7Z5W3 292 aaKnown RBP8.44□□□□□ -1.06
VPS39-205ENST00000562258 OR8S1Q8NH09 359 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 CNN2Q99439 309 aaKnown RBP8.44□□□□□ -1.06
VPS39-205ENST00000562258 BARD1Q99728 777 aaKnown RBP8.44□□□□□ -1.06
VPS39-205ENST00000562258 HDHD5Q9BXW7 423 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 MYEF2Q9P2K5 600 aaKnown RBP8.44□□□□□ -1.06
VPS39-205ENST00000562258 ERVK-18Q9QC07 812 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 RALGAPA2Q2PPJ7 1873 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 A0A1W2PPW3 197 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 A0A1W2PRQ8 180 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 OR6C76A6NM76 312 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 SLC43A1O75387 559 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 GCH1P30793 250 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 RGS6P49758 472 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 WNT3P56703 355 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 EIF2B1Q14232 305 aaKnown RBP8.44□□□□□ -1.06
VPS39-205ENST00000562258 PYDC2Q56P42 97 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 RNF220Q5VTB9 566 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 DPY19L4Q7Z388 723 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 DTX3Q8N9I9 347 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 PNLDC1Q8NA58 520 aaKnown RBP8.44□□□□□ -1.06
VPS39-205ENST00000562258 PSMA8Q8TAA3 256 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 NANOS1Q8WY41 292 aaKnown RBP8.44□□□□□ -1.06
VPS39-205ENST00000562258 CPNE5Q9HCH3 593 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 DYNLRB1Q9NP97 96 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 ZFP64Q9NPA5 681 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 WIF1Q9Y5W5 379 aa8.44□□□□□ -1.06
VPS39-205ENST00000562258 OR5H15A6NDH6 313 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms