RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 TCEAL7Q9BRU2 100 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 SGPP1Q9BX95 441 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 LGR4Q9BXB1 951 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 ZDHHC5Q9C0B5 715 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 SLC38A1Q9H2H9 487 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 POLE3Q9NRF9 147 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 ACSS1Q9NUB1 689 aaPredicted RBP12.26□□□□□ -0.45
CLK3-206ENST00000562078 C2orf42Q9NWW7 574 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 ZNF629Q9UEG4 869 aaPredicted RBP12.26□□□□□ -0.45
CLK3-206ENST00000562078 GPR34Q9UPC5 381 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 ASF1AQ9Y294 204 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 C17orf113A0A1B0GUU1 675 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 C5orf58C9J3I9 102 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 PGRMC2O15173 223 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 CHST10O43529 356 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 SLC25A12O75746 678 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 PCDH8O95206 1070 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 C6orf47O95873 294 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 PAK4O96013 591 aaPredicted RBP12.26□□□□□ -0.45
CLK3-206ENST00000562078 H1F0P07305 194 aaKnown RBP12.26□□□□□ -0.45
CLK3-206ENST00000562078 MMP11P24347 488 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 CTHP32929 405 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 EIF2S3P41091 472 aaKnown RBP12.26□□□□□ -0.45
CLK3-206ENST00000562078 PNLIPRP1P54315 467 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 CASP6P55212 293 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 HSD17B7P56937 341 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 TAS2R38P59533 333 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 ZNF385BQ569K4 471 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 CYB5R2Q6BCY4 276 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 TMEM71Q6P5X7 295 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 UQCC3Q6UW78 93 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 OR2W3Q7Z3T1 314 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 SYT9Q86SS6 491 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 SLC9B2Q86UD5 537 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 MISPQ8IVT2 679 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 SKA3Q8IX90 412 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 APOBEC4Q8WW27 367 aaKnown RBP12.26□□□□□ -0.45
CLK3-206ENST00000562078 COX14Q96I36 57 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 FAM117AQ9C073 453 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 OR52A5Q9H2C5 316 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 DPEP2Q9H4A9 486 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 TM7SF3Q9NS93 570 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 ASF1BQ9NVP2 202 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 TAS2R5Q9NYW4 299 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 SLC23A2Q9UGH3 650 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 SERGEFQ9UGK8 458 aa12.26□□□□□ -0.45
CLK3-206ENST00000562078 IRGMA1A4Y4 181 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 SAP18O00422 153 aaKnown RBP12.25□□□□□ -0.45
CLK3-206ENST00000562078 GOSR2O14653 212 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 TERTO14746 1132 aaKnown RBP12.25□□□□□ -0.45
CLK3-206ENST00000562078 GBAP04062 536 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 TIA1P31483 386 aaKnown RBP eCLIP12.25□□□□□ -0.45
CLK3-206ENST00000562078 POU3F4P49335 361 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 LUMP51884 338 aaPredicted RBP12.25□□□□□ -0.45
CLK3-206ENST00000562078 PPIAP62937 165 aaKnown RBP12.25□□□□□ -0.45
CLK3-206ENST00000562078 CDK3Q00526 305 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 CDK5Q00535 292 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 FAM69AQ5T7M9 428 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 AGBL4Q5VU57 503 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 FAM46CQ5VWP2 391 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 ZNF322Q6U7Q0 402 aaPredicted RBP12.25□□□□□ -0.45
CLK3-206ENST00000562078 ADAMTSL4Q6UY14 1074 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 Q7L0L9 218 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 AMZ2Q86W34 360 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 ZSCAN1Q8NBB4 408 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 ZNF740Q8NDX6 193 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 OR52N2Q8NGI0 321 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 OR4D11Q8NGI4 311 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 NRTNQ99748 197 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 PIAS3Q9Y6X2 628 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 COL4A2P08572 1712 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 A0A1B0GWJ7 208 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 METTL21EPA6NDL7 271 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 C1orf196B1AJZ1 125 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 UBBP0CG47 229 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 UBCP0CG48 685 aaKnown RBP12.25□□□□□ -0.45
CLK3-206ENST00000562078 C1GALT1C1LP0DN25 315 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 NUBP1P53384 320 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 CDH11P55287 796 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 DLX5P56178 289 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 RPS27AP62979 156 aaKnown RBP12.25□□□□□ -0.45
CLK3-206ENST00000562078 UBA52P62987 128 aaKnown RBP12.25□□□□□ -0.45
CLK3-206ENST00000562078 SHC2P98077 582 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 PIN1Q13526 163 aaPredicted RBP12.25□□□□□ -0.45
CLK3-206ENST00000562078 PON3Q15166 354 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 CST6Q15828 149 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 C2orf27AQ580R0 203 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 LINGO2Q7L985 606 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 LRRC56Q8IYG6 542 aaPredicted RBP12.25□□□□□ -0.45
CLK3-206ENST00000562078 GPR32P1Q8NGA4 272 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 C14orf144Q96I85 54 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 EFCAB11Q9BUY7 163 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 TMEM231Q9H6L2 316 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 DMRT3Q9NQL9 472 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 KLK11Q9UBX7 282 aa12.25□□□□□ -0.45
CLK3-206ENST00000562078 F5H5P2 479 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 K7EQS6 105 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 CH25HO95992 272 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 ACTL6AO96019 429 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 TGFB1P01137 390 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms