RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 PDLIM1O00151 329 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 KLF11O14901 512 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 SSX4O60224 188 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 THBS1P07996 1170 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 PTAFRP25105 342 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 IDH3AP50213 366 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 FABP6P51161 128 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 LGALS3BPQ08380 585 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 RGNQ15493 299 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 ZNF311Q5JNZ3 666 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 C1orf140Q5VVS0 124 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 AGAP6Q5VW22 663 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 MSANTD1Q6ZTZ1 278 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 SSX8Q7RTT4 187 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 DTX2Q86UW9 622 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 HTRA1Q92743 480 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 SLC25A36Q96CQ1 311 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 RADILQ96JH8 1075 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 HS6ST2Q96MM7 605 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 TAPBPLQ9BX59 468 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 SLCO1B3Q9NPD5 702 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 SLC17A5Q9NRA2 495 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 FAIMQ9NVQ4 179 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 SLAMF8Q9P0V8 285 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 MGAT4BQ9UQ53 548 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 ATP23Q9Y6H3 246 aa8.97□□□□□ -0.97
LDLR-214ENST00000560628 A0A096LPI6 279 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 AQP7P3A6NL99 342 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 KIAA1324LA8MWY0 1029 aaPredicted RBP8.96□□□□□ -0.98
LDLR-214ENST00000560628 C5orf58C9J3I9 102 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 KRT33AO76009 404 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 MPGP29372 298 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 TTKP33981 857 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 STX1BP61266 288 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 IRX1P78414 480 aaPredicted RBP8.96□□□□□ -0.98
LDLR-214ENST00000560628 SLC25A3Q00325 362 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 TGFBR3Q03167 851 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 KRTAP1-1Q07627 177 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 ETFDHQ16134 617 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 ZSWIM7Q19AV6 140 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 HIKESHIQ53FT3 197 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 AGBL2Q5U5Z8 902 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 RNF220Q5VTB9 566 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 B3GLCTQ6Y288 498 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 FUNDC1Q8IVP5 155 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 FBXL14Q8N1E6 418 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 DEPDC4Q8N2C3 294 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 KDM8Q8N371 416 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 NFKBIDQ8NI38 313 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 LRRC8CQ8TDW0 803 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 TMEM45BQ96B21 275 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 C3orf49Q96BT1 292 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 DHRS9Q9BPW9 319 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 EBF4Q9BQW3 602 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 SF3B5Q9BWJ5 86 aaKnown RBP8.96□□□□□ -0.98
LDLR-214ENST00000560628 PRR14Q9BWN1 585 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 CACNG6Q9BXT2 260 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 RSPO3Q9BXY4 272 aaPredicted RBP8.96□□□□□ -0.98
LDLR-214ENST00000560628 ARMC7Q9H6L4 198 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 A4GALTQ9NPC4 353 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 TCF7L2Q9NQB0 619 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 THUMPD1Q9NXG2 353 aaKnown RBP8.96□□□□□ -0.98
LDLR-214ENST00000560628 SLC25A37Q9NYZ2 338 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 DCTN4Q9UJW0 460 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 IFT52Q9Y366 437 aa8.96□□□□□ -0.98
LDLR-214ENST00000560628 HIVEP2P31629 2446 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 NR5A2O00482 541 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 POLR3GO15318 223 aaPredicted RBP8.95□□□□□ -0.98
LDLR-214ENST00000560628 AHSA1O95433 338 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 TGDSO95455 350 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 LGI1O95970 557 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 HOXB9P17482 250 aaPredicted RBP8.95□□□□□ -0.98
LDLR-214ENST00000560628 RPS5P46782 204 aaKnown RBP8.95□□□□□ -0.98
LDLR-214ENST00000560628 SELENOPP49908 381 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 P2RY4P51582 365 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 PRPS1P60891 318 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 PAGE3Q5JUK9 113 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 PRAMEF8Q5VWM4 474 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 PRAMEF7Q5VXH5 474 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 NIPAL3Q6P499 406 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 BLOC1S3Q6QNY0 202 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 CREB3L2Q70SY1 520 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 EPHX4Q8IUS5 362 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 MSRB3Q8IXL7 192 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 C10orf111Q8N326 155 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 MUC15Q8N387 334 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 GOLGA6L1Q8N7Z2 621 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 POMGNT2Q8NAT1 580 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 C1orf162Q8NEQ5 155 aaPredicted RBP8.95□□□□□ -0.98
LDLR-214ENST00000560628 SPDL1Q96EA4 605 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 KTI12Q96EK9 354 aaPredicted RBP8.95□□□□□ -0.98
LDLR-214ENST00000560628 ADAD1Q96M93 576 aaKnown RBP8.95□□□□□ -0.98
LDLR-214ENST00000560628 C7orf26Q96N11 449 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 RHNO1Q9BSD3 238 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 AMBRA1Q9C0C7 1298 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 GRIP2Q9C0E4 1043 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 RAD21L1Q9H4I0 556 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 BARX1Q9HBU1 254 aaPredicted RBP8.95□□□□□ -0.98
LDLR-214ENST00000560628 BCL2L10Q9HD36 194 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 CBLN4Q9NTU7 201 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms