RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 TACO1Q9BSH4 297 aaKnown RBP8.34□□□□□ -1.07
LDLR-211ENST00000560173 RBM24Q9BX46 236 aaKnown RBP8.34□□□□□ -1.07
LDLR-211ENST00000560173 BCO1Q9HAY6 547 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 C12orf10Q9HB07 376 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 ADA2Q9NZK5 511 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 KLHL9Q9P2J3 617 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 STX18Q9P2W9 335 aaKnown RBP8.34□□□□□ -1.07
LDLR-211ENST00000560173 ABCD2Q9UBJ2 740 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 RPS6KB2Q9UBS0 482 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 PROCRQ9UNN8 238 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 POMPQ9Y244 141 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 TRAPPC4Q9Y296 219 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 MPDZO75970 2070 aa8.34□□□□□ -1.07
LDLR-211ENST00000560173 F8P00451 2351 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 IGKV1D-42A0A075B6H8 117 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 IGKV3D-15A0A087WSY6 115 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 A0A0B4J2E0 115 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 A0A1B0GX12 115 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 ELOVL7A1L3X0 281 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 LIPT2A6NK58 231 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 ELOA3DA6NLF2 546 aaPredicted RBP8.33□□□□□ -1.08
LDLR-211ENST00000560173 ZNF814B7Z6K7 855 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 RAMP1O60894 148 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 ENTPD5O75356 428 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 IFNA14P01570 189 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 HOXB6P17509 224 aaKnown RBP8.33□□□□□ -1.08
LDLR-211ENST00000560173 KDELR2P33947 212 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 IDUAP35475 653 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 PEX19P40855 299 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 PCYT1AP49585 367 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 SLC35A1P78382 337 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 H3F3AP84243 136 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 EGR4Q05215 589 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 SLC34A1Q06495 639 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 RASGEF1BQ0VAM2 473 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 FLOT2Q14254 428 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 OR1Q1Q15612 314 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 ELOA3BQ3SY89 546 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 LRRC23Q53EV4 343 aaPredicted RBP8.33□□□□□ -1.08
LDLR-211ENST00000560173 CYBRD1Q53TN4 286 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 ALG10BQ5I7T1 473 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 SWT1Q5T5J6 900 aaKnown RBP8.33□□□□□ -1.08
LDLR-211ENST00000560173 C1orf140Q5VVS0 124 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 KIF18BQ86Y91 864 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 RBM45Q8IUH3 476 aaKnown RBP8.33□□□□□ -1.08
LDLR-211ENST00000560173 TUSC5Q8IXB3 177 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 ZNF610Q8N9Z0 462 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 ELOA3Q8NG57 546 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 PIGXQ8TBF5 258 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 STK35Q8TDR2 534 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 SLC26A7Q8TE54 656 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 RASSF5Q8WWW0 418 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 ASB9Q96DX5 294 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 MCHR1Q99705 422 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 PTDSS2Q9BVG9 487 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 ALG2Q9H553 416 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 TMEM27Q9HBJ8 222 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 SLC24A3Q9HC58 644 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 PLSCR4Q9NRQ2 329 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 KCNN3Q9UGI6 736 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 BAG5Q9UL15 447 aa8.33□□□□□ -1.08
LDLR-211ENST00000560173 AKAP6Q13023 2319 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 ZNF716A6NP11 495 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 ZNF724A8MTY0 619 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 FTCDNL1E5RQL4 147 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 CXCR6O00574 342 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 EIF1BO60739 113 aaKnown RBP8.32□□□□□ -1.08
LDLR-211ENST00000560173 FZD7O75084 574 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 GMNNO75496 209 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 LYPD3O95274 346 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 AHSA1O95433 338 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 GPIP06744 558 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 YES1P07947 543 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 PNMTP11086 282 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 HSD17B1P14061 328 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 FPR1P21462 350 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 CCKARP32238 428 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 CD79BP40259 229 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 KIR2DL3P43628 341 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 SLC16A1P53985 500 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 CDH12P55289 794 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 SNTB1Q13884 538 aaKnown RBP8.32□□□□□ -1.08
LDLR-211ENST00000560173 CEACAM7Q14002 265 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 TRIM25Q14258 630 aaKnown RBP8.32□□□□□ -1.08
LDLR-211ENST00000560173 PDK3Q15120 406 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 RCN1Q15293 331 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 OR7A5Q15622 319 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 TMEM201Q5SNT2 666 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 ZNF613Q6PF04 617 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 ULK3Q6PHR2 472 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 PAQR6Q6TCH4 344 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 TFAP2EQ6VUC0 442 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 NUFIP2Q7Z417 695 aaKnown RBP8.32□□□□□ -1.08
LDLR-211ENST00000560173 GDF7Q7Z4P5 450 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 TSPYL5Q86VY4 417 aaPredicted RBP8.32□□□□□ -1.08
LDLR-211ENST00000560173 CARM1Q86X55 608 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 CCDC103Q8IW40 242 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 VANGL1Q8TAA9 524 aaPredicted RBP8.32□□□□□ -1.08
LDLR-211ENST00000560173 PROX1Q92786 737 aa8.32□□□□□ -1.08
LDLR-211ENST00000560173 SLC38A4Q969I6 547 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms