RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 LIPT2A6NK58 231 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 AQP7P3A6NL99 342 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 ZNF587BE7ETH6 402 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 E9PBE3 544 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 HAX1O00165 279 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 HMGN4O00479 90 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 AP3D1O14617 1153 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 ZNF500O60304 480 aaPredicted RBP8□□□□□ -1.13
HDDC3-204ENST00000559834 PDE5AO76074 875 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 LY6HO94772 140 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 AKR7A3O95154 331 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 SERPINE1P05121 402 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 HOXB1P14653 301 aaPredicted RBP8□□□□□ -1.13
HDDC3-204ENST00000559834 IGFBP5P24593 272 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 ABCE1P61221 599 aaKnown RBP8□□□□□ -1.13
HDDC3-204ENST00000559834 COPZ1P61923 177 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 FUT5Q11128 374 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 EPS8Q12929 822 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 OR7A5Q15622 319 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 SYPL1Q16563 259 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 ZSWIM7Q19AV6 140 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 C3orf36Q3SXR2 165 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 FAM174BQ3ZCQ3 159 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 SPANXN4Q5MJ08 99 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 ANKRD16Q6P6B7 361 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 UGT2A3Q6UWM9 527 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 ZNF621Q6ZSS3 439 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 SPATA19Q7Z5L4 167 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 HMGN2P46Q86SG4 172 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 GPAT4Q86UL3 456 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 RNF130Q86XS8 419 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 FAM169BQ8N8A8 192 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 ANKFN1Q8N957 763 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 ZIC4Q8N9L1 334 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 OR4F15Q8NGB8 312 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 OR9K2Q8NGE7 335 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 WDR60Q8WVS4 1066 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 C3orf49Q96BT1 292 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 MSI2Q96DH6 328 aaKnown RBP8□□□□□ -1.13
HDDC3-204ENST00000559834 CCDC115Q96NT0 180 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 SORCS2Q96PQ0 1159 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 SLC38A2Q96QD8 506 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 PANX1Q96RD7 426 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 KATNB1Q9BVA0 655 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 ARMC7Q9H6L4 198 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 CA10Q9NS85 328 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 ZNF232Q9UNY5 417 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 RAP2CQ9Y3L5 183 aa8□□□□□ -1.13
HDDC3-204ENST00000559834 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8□□□□□ -1.13
HDDC3-204ENST00000559834 A0A096LPI6 279 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 IGHV1-18A0A0C4DH31 117 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 ZC3H12DA2A288 527 aaKnown RBP7.99□□□□□ -1.13
HDDC3-204ENST00000559834 PRAMEF27A3QJZ7 478 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 WDR91A4D1P6 747 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 A8MVM7 634 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 BIRC5O15392 142 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 ITM2AO43736 263 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 TYROBPO43914 113 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 KRT75O95678 551 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 CHRM4P08173 479 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 OR4A8P0C604 315 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 ZNF23P17027 643 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 ETV4P43268 484 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 PPOXP50336 477 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 SLC25A3Q00325 362 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 EFNB3Q15768 340 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 CHI3L2Q15782 390 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 TBRG1Q3YBR2 411 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 HIKESHIQ53FT3 197 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 MRPL2Q5T653 305 aaKnown RBP7.99□□□□□ -1.13
HDDC3-204ENST00000559834 WBP2NLQ6ICG8 309 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 CREB3L2Q70SY1 520 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 ZNF781Q8N8C0 355 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 OR1K1Q8NGR3 316 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 MAGEE2Q8TD90 523 aaPredicted RBP7.99□□□□□ -1.13
HDDC3-204ENST00000559834 NEU4Q8WWR8 484 aaPredicted RBP7.99□□□□□ -1.13
HDDC3-204ENST00000559834 BCL2L2Q92843 193 aaPredicted RBP7.99□□□□□ -1.13
HDDC3-204ENST00000559834 ZNF385AQ96PM9 386 aaKnown RBP7.99□□□□□ -1.13
HDDC3-204ENST00000559834 OR52E6Q96RD3 313 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 ZBTB18Q99592 522 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 PRR14Q9BWN1 585 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 SLC38A1Q9H2H9 487 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 CACYBPQ9HB71 228 aaKnown RBP7.99□□□□□ -1.13
HDDC3-204ENST00000559834 ADPRHL2Q9NX46 363 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 CALML5Q9NZT1 146 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 RASD1Q9Y272 281 aa7.99□□□□□ -1.13
HDDC3-204ENST00000559834 ARPC4-TTLL3A0A0A6YYG9 625 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 IGHV4-61A0A0C4DH41 118 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 SLC35F4A4IF30 521 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 CDHR4A6H8M9 788 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 STAMBPO95630 424 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 LGI1O95970 557 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 TFPTP0C1Z6 253 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 CREB1P16220 341 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 NCF2P19878 526 aaPredicted RBP7.98□□□□□ -1.13
HDDC3-204ENST00000559834 RPS4Y1P22090 263 aaKnown RBP7.98□□□□□ -1.13
HDDC3-204ENST00000559834 SLC1A6P48664 564 aa7.98□□□□□ -1.13
HDDC3-204ENST00000559834 IDH3GP51553 393 aaPredicted RBP7.98□□□□□ -1.13
HDDC3-204ENST00000559834 SH3BGRP55822 239 aaPredicted RBP7.98□□□□□ -1.13
HDDC3-204ENST00000559834 NAAAQ02083 359 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms