RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 HIST1H1CP16403 213 aaKnown RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 ELK1P19419 428 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 CD27P26842 260 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 SHC1P29353 583 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 PYCR1P32322 319 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 KIR2DL3P43628 341 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 SLC6A8P48029 635 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 PITPNBP48739 271 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 DIO1P49895 249 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 GDI2P50395 445 aaKnown RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 PGDP52209 483 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 RPS4XP62701 263 aaKnown RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 FHL1Q13642 323 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 ELOA3BQ3SY89 546 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 ACSM3Q53FZ2 586 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 SNAP47Q5SQN1 464 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 ZNF57Q68EA5 555 aaPredicted RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 ZC3H14Q6PJT7 736 aaKnown RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 B3GLCTQ6Y288 498 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 LSRQ86X29 649 aaPredicted RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 TCTE3Q8IZS6 198 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 ZNF615Q8N8J6 731 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 CYB561A3Q8NBI2 242 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 SDR9C7Q8NEX9 313 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 ELOA3Q8NG57 546 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 OR4N2Q8NGD1 307 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 TRMT10AQ8TBZ6 339 aaKnown RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 SNX33Q8WV41 574 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 CAPSLQ8WWF8 208 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 CREB3L1Q96BA8 519 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 C3orf49Q96BT1 292 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 ZDHHC12Q96GR4 267 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 ST6GAL2Q96JF0 529 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 OR1F2PQ96R84 312 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 MNTQ99583 582 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 ORAI3Q9BRQ5 295 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 TRAF4Q9BUZ4 470 aaPredicted RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 MRI1Q9BV20 369 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 HDHD2Q9H0R4 259 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 CHRDQ9H2X0 955 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 ST6GALNAC2Q9UJ37 374 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 MOKQ9UQ07 419 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 IER3IP1Q9Y5U9 82 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 SIRT4Q9Y6E7 314 aaPredicted RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 GOLGA4Q13439 2230 aaKnown RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 COL5A1P20908 1838 aaPredicted RBP6.65□□□□□ -1.34
VPS13C-206ENST00000558338 IGHV1OR15-9A0A0B4J2B8 117 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 A0A1B0GTQ1 180 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 FRG2CA6NGY1 282 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 NOTOA8MTQ0 251 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 MCIDASD6RGH6 385 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 PDCD5O14737 125 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 FLRT2O43155 660 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 HCRTR1O43613 425 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 CDC123O75794 336 aaPredicted RBP6.65□□□□□ -1.34
VPS13C-206ENST00000558338 GLCEO94923 617 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 IL33O95760 270 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 PF4V1P10720 104 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 CLUP10909 449 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 S100A1P23297 94 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 CD38P28907 300 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 RORAP35398 523 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 THBS2P35442 1172 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 HOXD12P35452 270 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 PPICP45877 212 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 GABRA4P48169 554 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 FNTBP49356 437 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 SLC25A1P53007 311 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 OR12D2P58182 307 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 DCAF7P61962 342 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 BTG1P62324 171 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 MAT1AQ00266 395 aaKnown RBP6.65□□□□□ -1.34
VPS13C-206ENST00000558338 INSL4Q14641 139 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 P2RY14Q15391 338 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 KLHL26Q53HC5 615 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 EMC4Q5J8M3 183 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 SLC6A19Q695T7 634 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 FCRLBQ6BAA4 426 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 TMEM53Q6P2H8 277 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 OVCH1Q7RTY7 1134 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 FAM220AQ7Z4H9 259 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 SFTPA2Q8IWL1 248 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 SAMD12Q8N8I0 201 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 OR5J2Q8NH18 312 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 OR4K13Q8NH42 304 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 OR51Q1Q8NH59 317 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 LMX1AQ8TE12 382 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 UBASH3BQ8TF42 649 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 GHSRQ92847 366 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 ZMYND19Q96E35 227 aaPredicted RBP6.65□□□□□ -1.34
VPS13C-206ENST00000558338 SENP5Q96HI0 755 aaPredicted RBP6.65□□□□□ -1.34
VPS13C-206ENST00000558338 GDF15Q99988 308 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 C7orf50Q9BRJ6 194 aaKnown RBP6.65□□□□□ -1.34
VPS13C-206ENST00000558338 MARVELD1Q9BSK0 173 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 B3GAT2Q9NPZ5 323 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 NRIP3Q9NQ35 241 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 KLHL1Q9NR64 748 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 MALT1Q9UDY8 824 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 RASD1Q9Y272 281 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 HIF3AQ9Y2N7 669 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms