RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 OPN3Q9H1Y3 402 aaPredicted RBP12.78□□□□□ -0.36
USP3-205ENST00000557884 C12orf49Q9H741 205 aa12.78□□□□□ -0.36
USP3-205ENST00000557884 KLHL9Q9P2J3 617 aa12.78□□□□□ -0.36
USP3-205ENST00000557884 RHCGQ9UBD6 479 aa12.78□□□□□ -0.36
USP3-205ENST00000557884 SAMD4AQ9UPU9 718 aaKnown RBP12.78□□□□□ -0.36
USP3-205ENST00000557884 KLF2Q9Y5W3 355 aaPredicted RBP12.78□□□□□ -0.36
USP3-205ENST00000557884 NCOA6Q14686 2063 aaPredicted RBP12.77□□□□□ -0.36
USP3-205ENST00000557884 EIF1BO60739 113 aaKnown RBP12.77□□□□□ -0.37
USP3-205ENST00000557884 FUT4P22083 530 aa12.77□□□□□ -0.37
USP3-205ENST00000557884 GTF2E2P29084 291 aaKnown RBP12.77□□□□□ -0.37
USP3-205ENST00000557884 UQCRC1P31930 480 aa12.77□□□□□ -0.37
USP3-205ENST00000557884 ASCL1P50553 236 aa12.77□□□□□ -0.37
USP3-205ENST00000557884 TMEM201Q5SNT2 666 aa12.77□□□□□ -0.37
USP3-205ENST00000557884 OTUD3Q5T2D3 398 aaPredicted RBP12.77□□□□□ -0.37
USP3-205ENST00000557884 PAQR6Q6TCH4 344 aa12.77□□□□□ -0.37
USP3-205ENST00000557884 NUFIP2Q7Z417 695 aaKnown RBP12.77□□□□□ -0.37
USP3-205ENST00000557884 NKAIN4Q8IVV8 208 aa12.77□□□□□ -0.37
USP3-205ENST00000557884 TMEM99Q8N816 258 aa12.77□□□□□ -0.37
USP3-205ENST00000557884 PIGXQ8TBF5 258 aa12.77□□□□□ -0.37
USP3-205ENST00000557884 PRRC1Q96M27 445 aa12.77□□□□□ -0.37
USP3-205ENST00000557884 ZNF300Q96RE9 604 aaPredicted RBP12.77□□□□□ -0.37
USP3-205ENST00000557884 EPYCQ99645 322 aa12.77□□□□□ -0.37
USP3-205ENST00000557884 PSD2Q9BQI7 771 aa12.77□□□□□ -0.37
USP3-205ENST00000557884 PRSS27Q9BQR3 290 aa12.77□□□□□ -0.37
USP3-205ENST00000557884 BTBD10Q9BSF8 475 aa12.77□□□□□ -0.37
USP3-205ENST00000557884 NPDC1Q9NQX5 325 aaPredicted RBP12.77□□□□□ -0.37
USP3-205ENST00000557884 GLRX2Q9NS18 164 aa12.77□□□□□ -0.37
USP3-205ENST00000557884 C6orf203Q9P0P8 240 aaPredicted RBP12.77□□□□□ -0.37
USP3-205ENST00000557884 SEC14L4Q9UDX3 406 aa12.77□□□□□ -0.37
USP3-205ENST00000557884 ING1Q9UK53 422 aaPredicted RBP12.77□□□□□ -0.37
USP3-205ENST00000557884 A4GNTQ9UNA3 340 aa12.77□□□□□ -0.37
USP3-205ENST00000557884 PROCRQ9UNN8 238 aa12.77□□□□□ -0.37
USP3-205ENST00000557884 PHF3Q92576 2039 aaKnown RBP12.77□□□□□ -0.37
USP3-205ENST00000557884 FTCDNL1E5RQL4 147 aa12.76□□□□□ -0.37
USP3-205ENST00000557884 LRRN3E7EW58 273 aa12.76□□□□□ -0.37
USP3-205ENST00000557884 hCG_2039718K7EN88 272 aa12.76□□□□□ -0.37
USP3-205ENST00000557884 YES1P07947 543 aa12.76□□□□□ -0.37
USP3-205ENST00000557884 GRPRP30550 384 aa12.76□□□□□ -0.37
USP3-205ENST00000557884 H3F3AP84243 136 aa12.76□□□□□ -0.37
USP3-205ENST00000557884 MS4A2Q01362 244 aa12.76□□□□□ -0.37
USP3-205ENST00000557884 EEF1A1P5Q5VTE0 462 aa12.76□□□□□ -0.37
USP3-205ENST00000557884 TTC33Q6PID6 262 aaPredicted RBP12.76□□□□□ -0.37
USP3-205ENST00000557884 C5orf46Q6UWT4 87 aa12.76□□□□□ -0.37
USP3-205ENST00000557884 LINC00114Q6XXX2 140 aa12.76□□□□□ -0.37
USP3-205ENST00000557884 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.76□□□□□ -0.37
USP3-205ENST00000557884 DHFR2Q86XF0 187 aa12.76□□□□□ -0.37
USP3-205ENST00000557884 OR6K3Q8NGY3 331 aa12.76□□□□□ -0.37
USP3-205ENST00000557884 MFSD8Q8NHS3 518 aa12.76□□□□□ -0.37
USP3-205ENST00000557884 TMEM255BQ8WV15 326 aa12.76□□□□□ -0.37
USP3-205ENST00000557884 PYURFQ96I23 114 aa12.76□□□□□ -0.37
USP3-205ENST00000557884 MPP4Q96JB8 637 aa12.76□□□□□ -0.37
USP3-205ENST00000557884 TMEM43Q9BTV4 400 aa12.76□□□□□ -0.37
USP3-205ENST00000557884 RBM24Q9BX46 236 aaKnown RBP12.76□□□□□ -0.37
USP3-205ENST00000557884 POLR2J2Q9GZM3 115 aaKnown RBP12.76□□□□□ -0.37
USP3-205ENST00000557884 POLR2J3Q9H1A7 115 aaKnown RBP12.76□□□□□ -0.37
USP3-205ENST00000557884 PIGMQ9H3S5 423 aa12.76□□□□□ -0.37
USP3-205ENST00000557884 ACTR3BQ9P1U1 418 aa12.76□□□□□ -0.37
USP3-205ENST00000557884 ENPP4Q9Y6X5 453 aa12.76□□□□□ -0.37
USP3-205ENST00000557884 AQP7P3A6NL99 342 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 ZNF716A6NP11 495 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 M0R082 166 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 MSTNO14793 375 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 FFAR1O14842 300 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 OR2T1O43869 369 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 DNAJC8O75937 253 aaPredicted RBP12.75□□□□□ -0.37
USP3-205ENST00000557884 DIRAS1O95057 198 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 CGAP01215 116 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 BGLAPP02818 100 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 IFNA8P32881 189 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 UGT2B15P54855 530 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 LTBQ06643 244 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 SNTB1Q13884 538 aaKnown RBP12.75□□□□□ -0.37
USP3-205ENST00000557884 TRIM25Q14258 630 aaKnown RBP12.75□□□□□ -0.37
USP3-205ENST00000557884 EXOC3L2Q2M3D2 409 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 FAM69AQ5T7M9 428 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 SP5Q6BEB4 398 aaPredicted RBP12.75□□□□□ -0.37
USP3-205ENST00000557884 ZNF474Q6S9Z5 364 aaPredicted RBP12.75□□□□□ -0.37
USP3-205ENST00000557884 TSEN54Q7Z6J9 526 aaKnown RBP12.75□□□□□ -0.37
USP3-205ENST00000557884 GPAT4Q86UL3 456 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 KDM8Q8N371 416 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 ZNF610Q8N9Z0 462 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 PFN4Q8NHR9 129 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 ZNF417Q8TAU3 575 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 RNASE6Q93091 150 aaKnown RBP12.75□□□□□ -0.37
USP3-205ENST00000557884 C7orf34Q96L11 122 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 MOGAT1Q96PD6 335 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 ZNF587Q96SQ5 575 aaPredicted RBP12.75□□□□□ -0.37
USP3-205ENST00000557884 FNDC11Q9BVV2 318 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 BCO1Q9HAY6 547 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 CHST11Q9NPF2 352 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 NDUFAF4Q9P032 175 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 JKAMPQ9P055 326 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 EMC3Q9P0I2 261 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 ICE1Q9Y2F5 2266 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 CENPEQ02224 2701 aa12.75□□□□□ -0.37
USP3-205ENST00000557884 IGKV3D-15A0A087WSY6 115 aa12.74□□□□□ -0.37
USP3-205ENST00000557884 A8MXE2 369 aa12.74□□□□□ -0.37
USP3-205ENST00000557884 PIP5K1CO60331 668 aa12.74□□□□□ -0.37
USP3-205ENST00000557884 CH25HO95992 272 aa12.74□□□□□ -0.37
USP3-205ENST00000557884 CD8BP10966 210 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms