RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 KIF18BQ86Y91 864 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 ACBD4Q8NC06 268 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 MFSD8Q8NHS3 518 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 GEMIN6Q8WXD5 167 aaKnown RBP12.1□□□□□ -0.47
SHMT2-228ENST00000557302 SLC25A36Q96CQ1 311 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 KTI12Q96EK9 354 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-228ENST00000557302 HSH2DQ96JZ2 352 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 EPYCQ99645 322 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 TMEM43Q9BTV4 400 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 POLR2J2Q9GZM3 115 aaKnown RBP12.1□□□□□ -0.47
SHMT2-228ENST00000557302 POLR2J3Q9H1A7 115 aaKnown RBP12.1□□□□□ -0.47
SHMT2-228ENST00000557302 C12orf49Q9H741 205 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 PLSCR4Q9NRQ2 329 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 GALNT8Q9NY28 637 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 EMC3Q9P0I2 261 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 CD300AQ9UGN4 299 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 MAGEL2Q9UJ55 1249 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 RPS6KA6Q9UK32 745 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 ING1Q9UK53 422 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-228ENST00000557302 PKDREJQ9NTG1 2253 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 ANKHD1Q8IWZ3 2542 aaKnown RBP12.1□□□□□ -0.47
SHMT2-228ENST00000557302 TRAV36DV7A0A075B6V5 113 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 IGKV3D-15A0A087WSY6 115 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 ZNF716A6NP11 495 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 ZNF814B7Z6K7 855 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 FTCDNL1E5RQL4 147 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 OR2T1O43869 369 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 AKR7A3O95154 331 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 OR5F1O95221 314 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 IFNW1P05000 195 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 GTF2E2P29084 291 aaKnown RBP12.09□□□□□ -0.47
SHMT2-228ENST00000557302 SLC16A1P53985 500 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 TAS2R41P59536 307 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 FXNQ16595 210 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 IFI44LQ53G44 452 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 OTUD3Q5T2D3 398 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-228ENST00000557302 FAM69AQ5T7M9 428 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 RINLQ6ZS11 566 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 FKBP9P1Q75LS8 142 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 NUFIP2Q7Z417 695 aaKnown RBP12.09□□□□□ -0.47
SHMT2-228ENST00000557302 GALNT5Q7Z7M9 940 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 TSPYL5Q86VY4 417 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-228ENST00000557302 P3H2Q8IVL5 708 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 CCDC103Q8IW40 242 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 DMRTC2Q8IXT2 367 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-228ENST00000557302 ARHGAP24Q8N264 748 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 ZNF610Q8N9Z0 462 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 SLC41A3Q96GZ6 507 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 MPP4Q96JB8 637 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 ZNF300Q96RE9 604 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-228ENST00000557302 PTDSS2Q9BVG9 487 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 SLC24A3Q9HC58 644 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 SLC7A7Q9UM01 511 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 SNX13Q9Y5W8 968 aa12.09□□□□□ -0.47
SHMT2-228ENST00000557302 AQP7P3A6NL99 342 aa12.08□□□□□ -0.48
SHMT2-228ENST00000557302 GPR171O14626 319 aa12.08□□□□□ -0.48
SHMT2-228ENST00000557302 RAMP1O60894 148 aa12.08□□□□□ -0.48
SHMT2-228ENST00000557302 UBOX5O94941 541 aa12.08□□□□□ -0.48
SHMT2-228ENST00000557302 LYPD3O95274 346 aa12.08□□□□□ -0.48
SHMT2-228ENST00000557302 THY1P04216 161 aa12.08□□□□□ -0.48
SHMT2-228ENST00000557302 IFNA8P32881 189 aa12.08□□□□□ -0.48
SHMT2-228ENST00000557302 MSX2P35548 267 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-228ENST00000557302 SORDQ00796 357 aa12.08□□□□□ -0.48
SHMT2-228ENST00000557302 EXOC3L2Q2M3D2 409 aa12.08□□□□□ -0.48
SHMT2-228ENST00000557302 ZNF474Q6S9Z5 364 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-228ENST00000557302 LINC00114Q6XXX2 140 aa12.08□□□□□ -0.48
SHMT2-228ENST00000557302 GDF7Q7Z4P5 450 aa12.08□□□□□ -0.48
SHMT2-228ENST00000557302 TMEM99Q8N816 258 aa12.08□□□□□ -0.48
SHMT2-228ENST00000557302 OR6S1Q8NH40 331 aa12.08□□□□□ -0.48
SHMT2-228ENST00000557302 TAAR8Q969N4 342 aa12.08□□□□□ -0.48
SHMT2-228ENST00000557302 MARVELD3Q96A59 401 aa12.08□□□□□ -0.48
SHMT2-228ENST00000557302 ZNF775Q96BV0 537 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-228ENST00000557302 NSMCE2Q96MF7 247 aa12.08□□□□□ -0.48
SHMT2-228ENST00000557302 SF3B5Q9BWJ5 86 aaKnown RBP12.08□□□□□ -0.48
SHMT2-228ENST00000557302 GORASP2Q9H8Y8 452 aa12.08□□□□□ -0.48
SHMT2-228ENST00000557302 FANCFQ9NPI8 374 aa12.08□□□□□ -0.48
SHMT2-228ENST00000557302 DCAF13Q9NV06 445 aaKnown RBP12.08□□□□□ -0.48
SHMT2-228ENST00000557302 ELOVL5Q9NYP7 299 aa12.08□□□□□ -0.48
SHMT2-228ENST00000557302 C6orf203Q9P0P8 240 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-228ENST00000557302 SAMD4AQ9UPU9 718 aaKnown RBP12.08□□□□□ -0.48
SHMT2-228ENST00000557302 ARPC2O15144 300 aa12.07□□□□□ -0.48
SHMT2-228ENST00000557302 FZD7O75084 574 aa12.07□□□□□ -0.48
SHMT2-228ENST00000557302 VAMP5O95183 116 aa12.07□□□□□ -0.48
SHMT2-228ENST00000557302 THRBP10828 461 aa12.07□□□□□ -0.48
SHMT2-228ENST00000557302 POU2F1P14859 743 aa12.07□□□□□ -0.48
SHMT2-228ENST00000557302 PTNP21246 168 aa12.07□□□□□ -0.48
SHMT2-228ENST00000557302 GRPRP30550 384 aa12.07□□□□□ -0.48
SHMT2-228ENST00000557302 CD79BP40259 229 aa12.07□□□□□ -0.48
SHMT2-228ENST00000557302 PCYT1AP49585 367 aa12.07□□□□□ -0.48
SHMT2-228ENST00000557302 PIN1Q13526 163 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-228ENST00000557302 SNTB1Q13884 538 aaKnown RBP12.07□□□□□ -0.48
SHMT2-228ENST00000557302 MFSD13AQ14CX5 517 aa12.07□□□□□ -0.48
SHMT2-228ENST00000557302 TMEM225Q6GV28 225 aa12.07□□□□□ -0.48
SHMT2-228ENST00000557302 TTC33Q6PID6 262 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-228ENST00000557302 TFAP2EQ6VUC0 442 aa12.07□□□□□ -0.48
SHMT2-228ENST00000557302 WDR88Q6ZMY6 472 aa12.07□□□□□ -0.48
SHMT2-228ENST00000557302 BEND4Q6ZU67 534 aa12.07□□□□□ -0.48
SHMT2-228ENST00000557302 ZNF100Q8IYN0 542 aa12.07□□□□□ -0.48
SHMT2-228ENST00000557302 C10orf53Q8N6V4 93 aa12.07□□□□□ -0.48
SHMT2-228ENST00000557302 PRRC1Q96M27 445 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms