RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 AHSA1O95433 338 aa14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 NPPAP01160 153 aa14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 C8BP07358 591 aa14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 PNMTP11086 282 aa14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 CD99P14209 185 aa14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 ADSLP30566 484 aaPredicted RBP14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 EGR4Q05215 589 aa14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 TSC22D1Q15714 1073 aa14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 SWT1Q5T5J6 900 aaKnown RBP14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 OR7E24Q6IFN5 339 aa14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 COMTD1Q86VU5 262 aa14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 C17orf78Q8N4C9 275 aa14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 ZIC4Q8N9L1 334 aa14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 OR9K2Q8NGE7 335 aa14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 OR6S1Q8NH40 331 aa14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 ZNF775Q96BV0 537 aaPredicted RBP14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 THOC1Q96FV9 657 aaKnown RBP14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 MUS81Q96NY9 551 aa14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 CCL19Q99731 98 aa14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 PTDSS2Q9BVG9 487 aa14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 TMEM120AQ9BXJ8 343 aa14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 GSX2Q9BZM3 304 aa14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 MED4Q9NPJ6 270 aa14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 RASD1Q9Y272 281 aa14.15□□□□□ -0.14
CCDC88C-209ENST00000554872 ROS1P08922 2347 aa14.14□□□□□ -0.15
CCDC88C-209ENST00000554872 NF1P21359 2839 aa14.14□□□□□ -0.15
CCDC88C-209ENST00000554872 OR6C65A6NJZ3 312 aa14.14□□□□□ -0.15
CCDC88C-209ENST00000554872 OR2T1O43869 369 aa14.14□□□□□ -0.15
CCDC88C-209ENST00000554872 FMO6PO60774 539 aa14.14□□□□□ -0.15
CCDC88C-209ENST00000554872 SMPD2O60906 423 aa14.14□□□□□ -0.15
CCDC88C-209ENST00000554872 MFN2O95140 757 aa14.14□□□□□ -0.15
CCDC88C-209ENST00000554872 HTR2AP28223 471 aa14.14□□□□□ -0.15
CCDC88C-209ENST00000554872 RIPPLY3P57055 190 aa14.14□□□□□ -0.15
CCDC88C-209ENST00000554872 FOXD4Q12950 439 aaPredicted RBP14.14□□□□□ -0.15
CCDC88C-209ENST00000554872 PPA1Q15181 289 aa14.14□□□□□ -0.15
CCDC88C-209ENST00000554872 OR7A5Q15622 319 aa14.14□□□□□ -0.15
CCDC88C-209ENST00000554872 TRMT5Q32P41 509 aaKnown RBP14.14□□□□□ -0.15
CCDC88C-209ENST00000554872 CASP12Q6UXS9 341 aa14.14□□□□□ -0.15
CCDC88C-209ENST00000554872 ARMC8Q8IUR7 673 aa14.14□□□□□ -0.15
CCDC88C-209ENST00000554872 TMEM99Q8N816 258 aa14.14□□□□□ -0.15
CCDC88C-209ENST00000554872 POMGNT2Q8NAT1 580 aa14.14□□□□□ -0.15
CCDC88C-209ENST00000554872 SLC38A4Q969I6 547 aa14.14□□□□□ -0.15
CCDC88C-209ENST00000554872 MUCL1Q96DR8 90 aa14.14□□□□□ -0.15
CCDC88C-209ENST00000554872 ZNF701Q9NV72 531 aaPredicted RBP14.14□□□□□ -0.15
CCDC88C-209ENST00000554872 PRR14LQ5THK1 2151 aa14.14□□□□□ -0.15
CCDC88C-209ENST00000554872 LOC102725191A0A1B0GVB3 256 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 A0A1B0GWA3 101 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 ELOA3DA6NLF2 546 aaPredicted RBP14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 BBIP1A8MTZ0 92 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 SLC22A2O15244 555 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 ARHGEF9O43307 516 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 TPST1O60507 370 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 AKR7A3O95154 331 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 CD3EP07766 207 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 ITGA5P08648 1049 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 PCGF2P35227 344 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 NKX6-1P78426 367 aaPredicted RBP14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 BNIP2Q12982 314 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 NFYCQ13952 458 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 CYP51A1Q16850 503 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 ELOA3BQ3SY89 546 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 GLIPR1L2Q4G1C9 344 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 FAM69AQ5T7M9 428 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 CGB2Q6NT52 195 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 ULK3Q6PHR2 472 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 ADPRHL1Q8NDY3 354 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 ELOA3Q8NG57 546 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 DNAJA3Q96EY1 480 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 RADILQ96JH8 1075 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 FGFR1OP2Q9NVK5 253 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 RPS6KB2Q9UBS0 482 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 SLC25A15Q9Y619 301 aa14.13□□□□□ -0.15
CCDC88C-209ENST00000554872 DSCAMO60469 2012 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 ACANP16112 2415 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 IGKV1D-42A0A075B6H8 117 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 A0A087WUJ7 227 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 A0A0B4J2E0 115 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 A0A1B0GX12 115 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 FXYD1O00168 92 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 FBP2O00757 339 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 LGI1O95970 557 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 PLAUP00749 431 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 MPGP29372 298 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 GZMMP51124 257 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 RGS8P57771 180 aaPredicted RBP14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 MTPNP58546 118 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 NCALDP61601 193 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 HOXC5Q00444 222 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 TGFBR3Q03167 851 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 DMTNQ08495 405 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 MFSD13AQ14CX5 517 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 MAPRE2Q15555 327 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 GABRA6Q16445 453 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 ALG10BQ5I7T1 473 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 INTS11Q5TA45 600 aaKnown RBP14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 TSPO2Q5TGU0 170 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 TMEM225Q6GV28 225 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 CREB3L2Q70SY1 520 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 CCDC80Q76M96 950 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms