RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 MINDY2Q8NBR6 621 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 ANKRD20A12PQ8NF67 263 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 OR4F17Q8NGA8 305 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 OR52J3Q8NH60 311 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 ZNF564Q8TBZ8 553 aaPredicted RBP1.18□□□□□ -2.22
PRPF39-208ENST00000554785 SCFD1Q8WVM8 642 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 NDRG1Q92597 394 aaKnown RBP1.18□□□□□ -2.22
PRPF39-208ENST00000554785 NRGNQ92686 78 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 DLX4Q92988 240 aaPredicted RBP1.18□□□□□ -2.22
PRPF39-208ENST00000554785 LHX4Q969G2 390 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 NCLNQ969V3 563 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 SERAC1Q96JX3 654 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 MTMR9Q96QG7 549 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 OR4F4Q96R69 305 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 CCDC94Q9BW85 323 aaPredicted RBP1.18□□□□□ -2.22
PRPF39-208ENST00000554785 ERVK-6Q9BXR3 956 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 TSPY26PQ9H489 355 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 DHX33Q9H6R0 707 aaKnown RBP1.18□□□□□ -2.22
PRPF39-208ENST00000554785 C6orf50Q9HD87 102 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 AMBNQ9NP70 447 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 NGBQ9NPG2 151 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 ESM1Q9NQ30 184 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 CENPMQ9NSP4 180 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 ZNF581Q9P0T4 197 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 DEC1Q9P2X7 70 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 ZNF490Q9ULM2 529 aaPredicted RBP1.18□□□□□ -2.22
PRPF39-208ENST00000554785 FZR1Q9UM11 496 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 RNF24Q9Y225 148 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 KLF2Q9Y5W3 355 aaPredicted RBP1.18□□□□□ -2.22
PRPF39-208ENST00000554785 MRPS18BQ9Y676 258 aaKnown RBP1.18□□□□□ -2.22
PRPF39-208ENST00000554785 INTS1Q8N201 2190 aaKnown RBP1.18□□□□□ -2.22
PRPF39-208ENST00000554785 SEC16AO15027 2179 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 NSD1Q96L73 2696 aaPredicted RBP1.18□□□□□ -2.22
PRPF39-208ENST00000554785 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.18□□□□□ -2.221e-12■■■■■ 46.1
PRPF39-208ENST00000554785 MN1Q10571 1320 aaPredicted RBP1.18□□□□□ -2.22
PRPF39-208ENST00000554785 SPTBP11277 2137 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 KLF18A0A0U1RQI7 1052 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 A0A1B0GTQ1 180 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 LRIT2A6NDA9 550 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 TRIM49BA6NDI0 452 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 MFSD2BA6NFX1 497 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 ZNF487B1APH4 448 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 NPIPA2E9PIF3 369 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 E9PMD0 336 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 F8VP50 259 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 H3BMH7 237 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 SGK494L7N484 410 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 LGALS8O00214 317 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 SLC31A1O15431 190 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 PHF1O43189 567 aaPredicted RBP1.18□□□□□ -2.22
PRPF39-208ENST00000554785 DUX1O43812 170 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 GPRIN2O60269 458 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 VENTXO95231 258 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 IGSF6O95976 241 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 SLC35G4P0C7Q5 338 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 HMGA1P17096 107 aaKnown RBP1.18□□□□□ -2.22
PRPF39-208ENST00000554785 BCL3P20749 454 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 PTPN6P29350 595 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 ARHGDIAP52565 204 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 ZNF85Q03923 595 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 FUT7Q11130 342 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 C1orf61Q13536 156 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 MXD4Q14582 209 aaPredicted RBP1.18□□□□□ -2.22
PRPF39-208ENST00000554785 CEBPEQ15744 281 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 ISXQ2M1V0 245 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 DEFB109BQ30KR1 87 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 NADK2Q4G0N4 442 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 EIPR1Q53HC9 387 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 SEL1L2Q5TEA6 688 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 WSCD1Q658N2 575 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 TPGS2Q68CL5 300 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 ZCCHC12Q6PEW1 402 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 ADAMTSL5Q6ZMM2 481 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 PAQR9Q6ZVX9 377 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 P4HA3Q7Z4N8 544 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 CEACAM19Q7Z692 300 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 TSEN54Q7Z6J9 526 aaKnown RBP1.18□□□□□ -2.22
PRPF39-208ENST00000554785 SYVN1Q86TM6 617 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 MMAAQ8IVH4 418 aaKnown RBP1.18□□□□□ -2.22
PRPF39-208ENST00000554785 SPAG16Q8N0X2 631 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 SLC22A18ASQ8N1D0 253 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 ARFGAP2Q8N6H7 521 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP1.18□□□□□ -2.22
PRPF39-208ENST00000554785 OR6T1Q8NGN1 323 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 CRYGNQ8WXF5 182 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 SENP8Q96LD8 212 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 ZNF578Q96N58 590 aaPredicted RBP1.18□□□□□ -2.22
PRPF39-208ENST00000554785 FOXN4Q96NZ1 517 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 PLIN2Q99541 437 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 CTRCQ99895 268 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 WRAP53Q9BUR4 548 aaKnown RBP1.18□□□□□ -2.22
PRPF39-208ENST00000554785 ROPN1Q9HAT0 212 aaPredicted RBP1.18□□□□□ -2.22
PRPF39-208ENST00000554785 FAM114A2Q9NRY5 505 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 GDAP2Q9NXN4 497 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 GPR83Q9NYM4 423 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 GCNT4Q9P109 453 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 DHRS4-AS1Q9P1J3 65 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 ACTR3BQ9P1U1 418 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 MBD2Q9UBB5 411 aa1.18□□□□□ -2.22
PRPF39-208ENST00000554785 P2RX2Q9UBL9 471 aa1.18□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms