RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PLD2O14939 933 aa23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 ZNF354AO60765 605 aaPredicted RBP23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 CD14P08571 375 aa23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 CLUP10909 449 aa23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 IDUAP35475 653 aa23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 AQP2P41181 271 aa23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 SUMO3P55854 103 aaPredicted RBP23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 FBXW4P57775 412 aa23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 C17orf67Q0P5P2 114 aa23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 PLA2G2CQ5R387 149 aa23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 C16orf87Q6PH81 154 aa23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 GRINAQ7Z429 371 aa23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 NPEPL1Q8NDH3 523 aa23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 THAP3Q8WTV1 239 aaPredicted RBP23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 TAAR8Q969N4 342 aa23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 TRMT61AQ96FX7 289 aaKnown RBP23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 KATNB1Q9BVA0 655 aa23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 ALG8Q9BVK2 526 aa23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 AKAP7Q9P0M2 348 aaPredicted RBP23.94■■□□□ 1.42
CCDC88C-205ENST00000553403 C17orf51A8MQB3 221 aa23.93■■□□□ 1.42
CCDC88C-205ENST00000553403 BLOC1S5-TXNDC5H3BN57 136 aa23.93■■□□□ 1.42
CCDC88C-205ENST00000553403 GMFGO60234 142 aa23.93■■□□□ 1.42
CCDC88C-205ENST00000553403 BGLAPP02818 100 aa23.93■■□□□ 1.42
CCDC88C-205ENST00000553403 TMED10P49755 219 aaKnown RBP23.93■■□□□ 1.42
CCDC88C-205ENST00000553403 RPS25P62851 125 aaKnown RBP23.93■■□□□ 1.42
CCDC88C-205ENST00000553403 ERVK-25P63136 954 aa23.93■■□□□ 1.42
CCDC88C-205ENST00000553403 ACTC1P68032 377 aa23.93■■□□□ 1.42
CCDC88C-205ENST00000553403 ACTA1P68133 377 aa23.93■■□□□ 1.42
CCDC88C-205ENST00000553403 GGTLC2Q14390 218 aa23.93■■□□□ 1.42
CCDC88C-205ENST00000553403 SLC35D3Q5M8T2 416 aa23.93■■□□□ 1.42
CCDC88C-205ENST00000553403 OR10H4Q8NGA5 316 aa23.93■■□□□ 1.42
CCDC88C-205ENST00000553403 TXNL4BQ9NX01 149 aaKnown RBP23.93■■□□□ 1.42
CCDC88C-205ENST00000553403 FBXL4Q9UKA2 621 aa23.93■■□□□ 1.42
CCDC88C-205ENST00000553403 ANKUB1A6NFN9 424 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 SLC25A12O75746 678 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 TXNDC12O95881 172 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 LALBAP00709 142 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 HIST1H2ABP04908 130 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 BMP4P12644 408 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 HTR3AP46098 478 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 GPR50Q13585 617 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 IL10RAQ13651 578 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 PCOLCEQ15113 449 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 GXYLT1Q4G148 440 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 ALG10Q5BKT4 473 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 CD200R1LQ6Q8B3 271 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 ZNF517Q6ZMY9 492 aaPredicted RBP23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 HIST3H2AQ7L7L0 130 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 SLC22A8Q8TCC7 542 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 TMEM234Q8WY98 164 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 SMPDL3BQ92485 455 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 HIST1H2ACQ93077 130 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 COQ7Q99807 217 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 ULBP3Q9BZM4 244 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 NMNAT2Q9BZQ4 307 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 MYOTQ9UBF9 498 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 TMED7-TICAM2A0A0A6YYA0 188 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 MT-ATP6P00846 226 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 CAPZA2P47755 286 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 INAQ16352 499 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 COL28A1Q2UY09 1125 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 EMC4Q5J8M3 183 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 FAM199XQ6PEV8 388 aaPredicted RBP23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 LYPD8Q6UX82 237 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 FAM122BQ7Z309 247 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 NANOGNBQ7Z5D8 188 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 POMGNT2Q8NAT1 580 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 CMKLR1Q99788 373 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 KLHL1Q9NR64 748 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 ASB6Q9NWX5 421 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 BABAM2Q9NXR7 383 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 TMED7Q9Y3B3 224 aa23.92■■□□□ 1.42
CCDC88C-205ENST00000553403 A0A075B6Q4 140 aa23.91■■□□□ 1.42
CCDC88C-205ENST00000553403 FGF9P31371 208 aaPredicted RBP23.91■■□□□ 1.42
CCDC88C-205ENST00000553403 CTXN1P60606 82 aa23.91■■□□□ 1.42
CCDC88C-205ENST00000553403 C5orf46Q6UWT4 87 aa23.91■■□□□ 1.42
CCDC88C-205ENST00000553403 STK35Q8TDR2 534 aa23.91■■□□□ 1.42
CCDC88C-205ENST00000553403 ELP5Q8TE02 316 aa23.91■■□□□ 1.42
CCDC88C-205ENST00000553403 C1GALT1C1Q96EU7 318 aa23.91■■□□□ 1.42
CCDC88C-205ENST00000553403 TIMP4Q99727 224 aa23.91■■□□□ 1.42
CCDC88C-205ENST00000553403 WDR70Q9NW82 654 aa23.91■■□□□ 1.42
CCDC88C-205ENST00000553403 NCDNQ9UBB6 729 aa23.91■■□□□ 1.42
CCDC88C-205ENST00000553403 PEX16Q9Y5Y5 336 aa23.91■■□□□ 1.42
CCDC88C-205ENST00000553403 EXPH5Q8NEV8 1989 aa23.91■■□□□ 1.42
CCDC88C-205ENST00000553403 TRDV1A0A1B0GX56 115 aa23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 LNP1A1A4G5 178 aa23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 SUSD5O60279 629 aa23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 NPIPB7O75200 414 aa23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 GYPBP06028 91 aa23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 RPS5P46782 204 aaKnown RBP23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 DIO1P49895 249 aa23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 DLX5P56178 289 aa23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 PON3Q15166 354 aa23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 TUBA3EQ6PEY2 450 aa23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 ADGRG3Q86Y34 549 aa23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 KLBQ86Z14 1044 aa23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 ATP6V1C2Q8NEY4 427 aa23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 ST8SIA1Q92185 356 aa23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 PMEPA1Q969W9 287 aa23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 RASD2Q96D21 266 aa23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 136.4 ms