RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 MEF2AQ02078 507 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-216ENST00000552909 DHODHQ02127 395 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 ACY1Q03154 408 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 ZSWIM7Q19AV6 140 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 PRAMEF13Q5VWM6 474 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 FRG2Q64ET8 278 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 ZNF770Q6IQ21 691 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-216ENST00000552909 FAM199XQ6PEV8 388 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-216ENST00000552909 LYPD4Q6UWN0 246 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 ANGPTL8Q6UXH0 198 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 TMPRSS11BQ86T26 416 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 PAQR7Q86WK9 346 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 MCATQ8IVS2 390 aaKnown RBP7.05□□□□□ -1.28
LIMA1-216ENST00000552909 CARFQ8N187 725 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 RNF175Q8N4F7 328 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 IL22RA1Q8N6P7 574 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 ZNF454Q8N9F8 522 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 C19orf47Q8N9M1 422 aaKnown RBP7.05□□□□□ -1.28
LIMA1-216ENST00000552909 HUS1BQ8NHY5 278 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 CDC26Q8NHZ8 85 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 SMPDL3AQ92484 453 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 INTS12Q96CB8 462 aaKnown RBP7.05□□□□□ -1.28
LIMA1-216ENST00000552909 LRRC46Q96FV0 321 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 FCRL4Q96PJ5 515 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 FRG2BQ96QU4 278 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 CCNL2Q96S94 520 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-216ENST00000552909 ZPBPQ9BS86 351 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 CACNG6Q9BXT2 260 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 ACTR6Q9GZN1 396 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 RNF32Q9H0A6 362 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 ESRP2Q9H6T0 727 aaKnown RBP7.05□□□□□ -1.28
LIMA1-216ENST00000552909 BIN3Q9NQY0 253 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 CYSLTR2Q9NS75 346 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 EMC3Q9P0I2 261 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 RHCGQ9UBD6 479 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 REV1Q9UBZ9 1251 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 TAC3Q9UHF0 121 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 TMEM184BQ9Y519 407 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-216ENST00000552909 ENPP4Q9Y6X5 453 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 IGKV1-8A0A0C4DH67 115 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 IRGMA1A4Y4 181 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 C1orf226A1L170 272 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 FAM227AF5H4B4 570 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 H3BMH7 237 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 TLX2O43763 284 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-216ENST00000552909 SLC28A2O43868 658 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 UGDHO60701 494 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 IGFBP1P08833 259 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-216ENST00000552909 CXCL2P19875 107 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 POU3F2P20265 443 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-216ENST00000552909 CD82P27701 267 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 RFX3P48380 749 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 RAB13P51153 203 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 DDX39BQ13838 428 aaKnown RBP7.04□□□□□ -1.28
LIMA1-216ENST00000552909 SCARB2Q14108 478 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 SLC5A12Q1EHB4 618 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 GGTA1PQ4G0N0 100 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 IDNKQ5T6J7 187 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 FCRL6Q6DN72 434 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 HIST2H2AA3Q6FI13 130 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 GRHL2Q6ISB3 625 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 LCN10Q6JVE6 187 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 SLC27A4Q6P1M0 643 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 NXPE4Q6UWF7 544 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 LCTLQ6UWM7 567 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 ALKAL2Q6UX46 152 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 WDR53Q7Z5U6 358 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-216ENST00000552909 PDZD9Q8IXQ8 264 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 GPR135Q8IZ08 494 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 TOMM5Q8N4H5 51 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 FAM26EQ8N5C1 309 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 ZFP41Q8N8Y5 198 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 NSMAFQ92636 917 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 MRPS24Q96EL2 167 aaKnown RBP7.04□□□□□ -1.28
LIMA1-216ENST00000552909 MTERF1Q99551 399 aaKnown RBP7.04□□□□□ -1.28
LIMA1-216ENST00000552909 DUSP26Q9BV47 211 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 TMED9Q9BVK6 235 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 NKX6-2Q9C056 277 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-216ENST00000552909 PITHD1Q9GZP4 211 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-216ENST00000552909 PRORYQ9H606 182 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 EVA1AQ9H8M9 152 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 SYNPO2LQ9H987 977 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 TVP23BQ9NYZ1 205 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 CTSFQ9UBX1 484 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 TESQ9UGI8 421 aaKnown RBP7.04□□□□□ -1.28
LIMA1-216ENST00000552909 IL17BQ9UHF5 180 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 GPR160Q9UJ42 338 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 LHX6Q9UPM6 363 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 TMEM5Q9Y2B1 443 aa7.04□□□□□ -1.28
LIMA1-216ENST00000552909 PLSCR5A0PG75 271 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 SHISA3A0PJX4 238 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 OR6C65A6NJZ3 312 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 TEX46H3BTG2 121 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 H7BY64 318 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 GABRPO00591 440 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 GNB5O14775 395 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 SSX5O60225 188 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 CTSVO60911 334 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 SH3BGRLO75368 114 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 RP2O75695 350 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms