RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 TRIP10Q15642 601 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 DUSP5Q16690 384 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 TATDN3Q17R31 274 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 GTDC1Q4AE62 458 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 KCTD21Q4G0X4 260 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 RFTN2Q52LD8 501 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-208ENST00000551691 KLHL22Q53GT1 634 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 CARD16Q5EG05 197 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 SYPL2Q5VXT5 272 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 NCR3LG1Q68D85 454 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 FBXL22Q6P050 247 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 BHLHB9Q6PI77 547 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 WDR74Q6RFH5 385 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-208ENST00000551691 CES3Q6UWW8 571 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 ZNF730Q6ZMV8 503 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 FAM92BQ6ZTR7 304 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 SH2D5Q6ZV89 423 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 RUFY3Q7L099 469 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 NANOGNBQ7Z5D8 188 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 CTAGE6Q86UF2 777 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 C17orf64Q86WR6 236 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 CDC20BQ86Y33 519 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 CTAGE4Q8IX94 777 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 ZNF557Q8N988 423 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-208ENST00000551691 MAPK1IP1LQ8NDC0 245 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 OR4D10Q8NGI6 311 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 OR10G6Q8NH81 332 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 GOLGA5Q8TBA6 731 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 GPR148Q8TDV2 347 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 CXorf40AQ8TE69 158 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 SLC37A2Q8TED4 501 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 CA5BP1Q8WTZ4 195 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 TM9SF4Q92544 642 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 NR4A3Q92570 626 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 OMA1Q96E52 524 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 MED30Q96HR3 178 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 PPP1R16AQ96I34 528 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 C9orf72Q96LT7 481 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 NSMCE3Q96MG7 304 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 ERGIC2Q96RQ1 377 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 ZBTB18Q99592 522 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 EPYCQ99645 322 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 ZSCAN5AQ9BUG6 496 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 TM6SF2Q9BZW4 377 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 EGLN3Q9H6Z9 239 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 EVA1AQ9H8M9 152 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 KCNK13Q9HB14 408 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 ABCC13Q9NSE7 274 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 SAMSN1Q9NSI8 373 aaKnown RBP3.26□□□□□ -1.89
LIMA1-208ENST00000551691 SMPD3Q9NY59 655 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-208ENST00000551691 IL17CQ9P0M4 197 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 SEC14L3Q9UDX4 400 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 HS3ST2Q9Y278 367 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 MEMO1Q9Y316 297 aa3.26□□□□□ -1.89
LIMA1-208ENST00000551691 PCYT1BQ9Y5K3 369 aaPredicted RBP3.26□□□□□ -1.89
LIMA1-208ENST00000551691 DOCK10Q96BY6 2186 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 ANKRD36A6QL64 1941 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 A0A087WUV0 522 aaPredicted RBP3.25□□□□□ -1.89
LIMA1-208ENST00000551691 A0A087WZ39 114 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 hCG_38984A0A1B0GV85 526 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 SERINC4A6NH21 518 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 NKX6-3A6NJ46 265 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 INSIG1O15503 277 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 MLNRO43193 412 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 ZW10O43264 779 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 LANCL1O43813 399 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 SLC19A2O60779 497 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 PFKFB2O60825 505 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 SAP30O75446 220 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 TOXO94900 526 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 OR4F21O95013 312 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 LCA5LO95447 670 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 ADCY5O95622 1261 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 ZBTB11O95625 1053 aaPredicted RBP3.25□□□□□ -1.89
LIMA1-208ENST00000551691 TXNDC12O95881 172 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 HOXD4P09016 255 aaPredicted RBP3.25□□□□□ -1.89
LIMA1-208ENST00000551691 T-ENOLP0DO92 83 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 DRD5P21918 477 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 GPX3P22352 226 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 IL4RP24394 825 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 PSMA2P25787 234 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 FEN1P39748 380 aaKnown RBP3.25□□□□□ -1.89
LIMA1-208ENST00000551691 ACTR1BP42025 376 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 SLC1A6P48664 564 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 CCR4P51679 360 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 DAOAP59103 153 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 DDX39BQ13838 428 aaKnown RBP3.25□□□□□ -1.89
LIMA1-208ENST00000551691 MEF2DQ14814 521 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 PDK3Q15120 406 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 SNRNP35Q16560 246 aaKnown RBP3.25□□□□□ -1.89
LIMA1-208ENST00000551691 ZNF74Q16587 644 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 PARP6Q2NL67 630 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 ADPRMQ3LIE5 342 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.25□□□□□ -1.89
LIMA1-208ENST00000551691 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.25□□□□□ -1.89
LIMA1-208ENST00000551691 CAPN13Q6MZZ7 669 aaPredicted RBP3.25□□□□□ -1.89
LIMA1-208ENST00000551691 C22orf39Q6P5X5 142 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 TAS2R42Q7RTR8 314 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 C5orf24Q7Z6I8 188 aa3.25□□□□□ -1.89
LIMA1-208ENST00000551691 UNC93AQ86WB7 457 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms