RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 GPR89AB7ZAQ6 455 aa13.8□□□□□ -0.2
USP28-214ENST00000545540 H0YC42 278 aa13.8□□□□□ -0.2
USP28-214ENST00000545540 DCTN6O00399 190 aa13.8□□□□□ -0.2
USP28-214ENST00000545540 IFNA16P05015 189 aa13.8□□□□□ -0.2
USP28-214ENST00000545540 THBS1P07996 1170 aa13.8□□□□□ -0.2
USP28-214ENST00000545540 GPR89BP0CG08 455 aa13.8□□□□□ -0.2
USP28-214ENST00000545540 FOXL2P58012 376 aa13.8□□□□□ -0.2
USP28-214ENST00000545540 PYHIN1Q6K0P9 492 aa13.8□□□□□ -0.2
USP28-214ENST00000545540 CA13Q8N1Q1 262 aa13.8□□□□□ -0.2
USP28-214ENST00000545540 OR2T35Q8NGX2 323 aa13.8□□□□□ -0.2
USP28-214ENST00000545540 GTPBP2Q9BX10 602 aaKnown RBP13.8□□□□□ -0.2
USP28-214ENST00000545540 NIPAL2Q9H841 368 aa13.8□□□□□ -0.2
USP28-214ENST00000545540 SFXN1Q9H9B4 322 aa13.8□□□□□ -0.2
USP28-214ENST00000545540 DNAJB12Q9NXW2 375 aaKnown RBP13.8□□□□□ -0.2
USP28-214ENST00000545540 CPNE7Q9UBL6 633 aa13.8□□□□□ -0.2
USP28-214ENST00000545540 ING4Q9UNL4 249 aa13.8□□□□□ -0.2
USP28-214ENST00000545540 YBX2Q9Y2T7 364 aaKnown RBP13.8□□□□□ -0.2
USP28-214ENST00000545540 TMEM72A0PK05 275 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 MAS1P04201 325 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 H2AFB2P0C5Z0 115 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 NRG3P56975 720 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 BICRALQ6AI39 1079 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 SLC25A25Q6KCM7 469 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 PRSS58Q8IYP2 241 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 OR10AC1Q8NH08 325 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 SLC37A2Q8TED4 501 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 HYLS1Q96M11 299 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 GDE1Q9NZC3 331 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 MYEF2Q9P2K5 600 aaKnown RBP13.79□□□□□ -0.2
USP28-214ENST00000545540 GTF2A1LQ9UNN4 478 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 ERVK-19Q9WJR5 959 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 MUC22E2RYF6 1773 aaPredicted RBP13.79□□□□□ -0.2
USP28-214ENST00000545540 ZNF593O00488 134 aaPredicted RBP13.79□□□□□ -0.2
USP28-214ENST00000545540 OIP5O43482 229 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 WISP1O95388 367 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 PON3Q15166 354 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 YOD1Q5VVQ6 348 aaPredicted RBP13.79□□□□□ -0.2
USP28-214ENST00000545540 CBLN3Q6UW01 205 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 TMEM92Q6UXU6 159 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 PXKQ7Z7A4 578 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 GFI1Q99684 422 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 SARGQ9BW04 601 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 DUSP22Q9NRW4 184 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 STMN3Q9NZ72 180 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 KLHDC2Q9Y2U9 406 aa13.79□□□□□ -0.2
USP28-214ENST00000545540 LEUTXA8MZ59 168 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 B4DGG1 531 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 ZFPL1O95159 310 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 AGR2O95994 175 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 GBX2P52951 348 aaPredicted RBP13.78□□□□□ -0.2
USP28-214ENST00000545540 NFATC4Q14934 902 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 CDK5R1Q15078 307 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 HSD17B12Q53GQ0 312 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 LEG1Q6P5S2 330 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 TAF8Q7Z7C8 310 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 ZNF321PQ8N8H1 164 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 ZNF680Q8NEM1 530 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 RIT1Q92963 219 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 PPP1R14AQ96A00 147 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 MRGPRX1Q96LB2 322 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 C1QTNF7Q9BXJ2 289 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 NCDNQ9UBB6 729 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 HEBP2Q9Y5Z4 205 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 GPR171O14626 319 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 GALR3O60755 368 aaPredicted RBP13.78□□□□□ -0.2
USP28-214ENST00000545540 CSTAP01040 98 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 ANXA7P20073 488 aaKnown RBP13.78□□□□□ -0.2
USP28-214ENST00000545540 SLC6A6P31641 620 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 DCTDP32321 178 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 ADH7P40394 386 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 TSFMP43897 325 aaKnown RBP13.78□□□□□ -0.2
USP28-214ENST00000545540 LGALSLQ3ZCW2 172 aaPredicted RBP13.78□□□□□ -0.2
USP28-214ENST00000545540 NPSR1Q6W5P4 371 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 NUDT18Q6ZVK8 323 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 GPALPP1Q8IXQ4 340 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 OR51A4Q8NGJ6 313 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 OR52B4Q8NGK2 314 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 SCMH1Q96GD3 660 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 MOGAT1Q96PD6 335 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 CNN2Q99439 309 aaKnown RBP13.78□□□□□ -0.2
USP28-214ENST00000545540 NRSN2Q9GZP1 204 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 LIN7BQ9HAP6 207 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 NANSQ9NR45 359 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 ANKRD10Q9NXR5 420 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 MUC3AQ02505 3323 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 UNC13CQ8NB66 2214 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 URADA6NGE7 173 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 POM121CA8CG34 1229 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 ARPC1BO15143 372 aaKnown RBP13.78□□□□□ -0.2
USP28-214ENST00000545540 SIX6O95475 246 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 CRYZL1O95825 349 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 ATP1B1P05026 303 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 UCHL1P09936 223 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 SRMP19623 302 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 CENPAP49450 140 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 ZP1P60852 638 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 GSG1Q2KHT4 349 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 SLC38A6Q8IZM9 456 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 RNF113BQ8IZP6 322 aaKnown RBP13.78□□□□□ -0.2
USP28-214ENST00000545540 NT5CQ8TCD5 201 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms