RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 LIMS1P48059 325 aa15.33■□□□□ 0.04
LIG1-204ENST00000542460 GK3PQ14409 553 aa15.33■□□□□ 0.04
LIG1-204ENST00000542460 PPP4R4Q6NUP7 873 aa15.33■□□□□ 0.04
LIG1-204ENST00000542460 TBPL2Q6SJ96 375 aa15.33■□□□□ 0.04
LIG1-204ENST00000542460 NRMQ8IXM6 262 aa15.33■□□□□ 0.04
LIG1-204ENST00000542460 C10orf53Q8N6V4 93 aa15.33■□□□□ 0.04
LIG1-204ENST00000542460 FNDC9Q8TBE3 224 aa15.33■□□□□ 0.04
LIG1-204ENST00000542460 TTYH2Q9BSA4 534 aa15.33■□□□□ 0.04
LIG1-204ENST00000542460 MEMO1Q9Y316 297 aa15.33■□□□□ 0.04
LIG1-204ENST00000542460 SAMHD1Q9Y3Z3 626 aaKnown RBP15.33■□□□□ 0.04
LIG1-204ENST00000542460 RP1L1Q8IWN7 2480 aaPredicted RBP15.32■□□□□ 0.04
LIG1-204ENST00000542460 SH3PXD2BA1X283 911 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 ENO4A6NNW6 628 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 FZD7O75084 574 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 DEAF1O75398 565 aaPredicted RBP15.32■□□□□ 0.04
LIG1-204ENST00000542460 TGM6O95932 706 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 CH25HO95992 272 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 BGLAPP02818 100 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 FCGR1AP12314 374 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 FASP25445 335 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 GTF2E2P29084 291 aaKnown RBP15.32■□□□□ 0.04
LIG1-204ENST00000542460 CTBP2P56545 445 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 LSM11P83369 360 aaKnown RBP eCLIP15.32■□□□□ 0.04
LIG1-204ENST00000542460 H3F3AP84243 136 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 PRKCDQ05655 676 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 SEC23BQ15437 767 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 ZNF74Q16587 644 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 EXOC3L2Q2M3D2 409 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 TMEM211Q6ICI0 200 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 PAQR6Q6TCH4 344 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 FCRLAQ7L513 359 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 P4HA3Q7Z4N8 544 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 CDK20Q8IZL9 346 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 OR4K5Q8NGD3 323 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 ROBO4Q8WZ75 1007 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 BPIFA2Q96DR5 249 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 SGTBQ96EQ0 304 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 TM9SF2Q99805 663 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 NAA11Q9BSU3 229 aaPredicted RBP15.32■□□□□ 0.04
LIG1-204ENST00000542460 KRCC1Q9NPI7 259 aaPredicted RBP15.32■□□□□ 0.04
LIG1-204ENST00000542460 C20orf141Q9NUB4 165 aa15.32■□□□□ 0.04
LIG1-204ENST00000542460 MBD3L4A6NDZ8 208 aaPredicted RBP15.31■□□□□ 0.04
LIG1-204ENST00000542460 MBD3L3A6NE82 208 aaPredicted RBP15.31■□□□□ 0.04
LIG1-204ENST00000542460 MBD3L5A6NJ08 208 aaPredicted RBP15.31■□□□□ 0.04
LIG1-204ENST00000542460 KDM4EB2RXH2 506 aaPredicted RBP15.31■□□□□ 0.04
LIG1-204ENST00000542460 CCL21O00585 134 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 SMAD9O15198 467 aaKnown RBP15.31■□□□□ 0.04
LIG1-204ENST00000542460 PIP5K1CO60331 668 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 IFI30P13284 250 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 GRPRP30550 384 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 TIMP3P35625 211 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 NUP107P57740 925 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 LTBQ06643 244 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 GTF2IRD2BQ6EKJ0 949 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 PLXDC2Q6UX71 529 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 MAMDC2Q7Z304 686 aaPredicted RBP15.31■□□□□ 0.04
LIG1-204ENST00000542460 GTF2IRD2Q86UP8 949 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 SLC43A2Q8N370 569 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 RPRMLQ8N4K4 120 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 LINC00471Q8N535 108 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 OR4C15Q8NGM1 316 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 MBD3L2Q8NHZ7 208 aaPredicted RBP15.31■□□□□ 0.04
LIG1-204ENST00000542460 MOGAT1Q96PD6 335 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 DMRTA2Q96SC8 542 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 ASPNQ9BXN1 380 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 FKRPQ9H9S5 495 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 NANSQ9NR45 359 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 VNN3Q9NY84 501 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 ZNF229Q9UJW7 825 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 CORINQ9Y5Q5 1042 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 U3KQV3 271 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 POLEQ07864 2286 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 NBASA2RRP1 2371 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 GTF3C1Q12789 2109 aa15.31■□□□□ 0.04
LIG1-204ENST00000542460 IGHV3-15A0A0B4J1V0 119 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 LRRN3E7EW58 273 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 LRRTM2O43300 516 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 OR10H3O60404 316 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 AQP8O94778 261 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 AKR7A3O95154 331 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 LDLRP01130 860 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 GLI4P10075 376 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 FUT1P19526 365 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 CBLP22681 906 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 DNAJA1P31689 397 aaKnown RBP15.3■□□□□ 0.04
LIG1-204ENST00000542460 IFNGR2P38484 337 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 PMPCAQ10713 525 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 ATP6AP1Q15904 470 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 C4orf17Q53FE4 359 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 OTUD3Q5T2D3 398 aaPredicted RBP15.3■□□□□ 0.04
LIG1-204ENST00000542460 OR2A2Q6IF42 318 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 SEM1Q6ZVN7 128 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 ZGRF1Q86YA3 2104 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 TMEM99Q8N816 258 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 SCAIQ8N9R8 606 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 PIGXQ8TBF5 258 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 RNF128Q8TEB7 428 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 LIPHQ8WWY8 451 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 STMN2Q93045 179 aa15.3■□□□□ 0.04
LIG1-204ENST00000542460 RNF122Q9H9V4 155 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms