RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 HPGDP15428 266 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 APEX1P27695 318 aaKnown RBP9.02□□□□□ -0.97
SS18-205ENST00000542420 HTR3AP46098 478 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 RFX2P48378 723 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 PNLIPRP2P54317 469 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 GFERP55789 205 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 OR2B6P58173 313 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 RPL6Q02878 288 aaKnown RBP9.02□□□□□ -0.97
SS18-205ENST00000542420 CDK5R1Q15078 307 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 SF3A2Q15428 464 aaKnown RBP9.02□□□□□ -0.97
SS18-205ENST00000542420 ZNF74Q16587 644 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 TRIQKQ629K1 86 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 CNIH2Q6PI25 160 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 UNQ9370/PRO34162Q6UXP9 181 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 OVCH1Q7RTY7 1134 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 SLC35F2Q8IXU6 374 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 LRRC75AQ8NAA5 344 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 FAM98AQ8NCA5 519 aaKnown RBP9.02□□□□□ -0.97
SS18-205ENST00000542420 OR52E2Q8NGJ4 325 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 ABHD4Q8TB40 342 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 ZNF721Q8TF20 911 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 RLN3Q8WXF3 142 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 C4orf36Q96KX1 117 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 DPYSL5Q9BPU6 564 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 RBCK1Q9BYM8 510 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 TGIF2Q9GZN2 237 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 OR51V1Q9H2C8 321 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 MED20Q9H944 212 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 CYSLTR2Q9NS75 346 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 SLCO1B1Q9Y6L6 691 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 RNF215Q9Y6U7 377 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 IGKV1D-42A0A075B6H8 117 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 A0A0X1KG70 313 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 HMX3A6NHT5 357 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 PHYHO14832 338 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 DDAH2O95865 285 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 MT-ATP6P00846 226 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 ANKRD34CP0C6C1 535 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 ASAH2BP0C7U1 165 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 PRKAR1AP10644 381 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 HIST1H1CP16403 213 aaKnown RBP9.02□□□□□ -0.97
SS18-205ENST00000542420 NPR2P20594 1047 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 FBLP22087 321 aaKnown RBP9.02□□□□□ -0.97
SS18-205ENST00000542420 HLA-DMAP28067 261 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 UQCRC1P31930 480 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 DDOSTP39656 456 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 ARL4DP49703 201 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 AFF3P51826 1226 aaKnown RBP9.02□□□□□ -0.97
SS18-205ENST00000542420 PGDP52209 483 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 PYDC2Q56P42 97 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 IDO2Q6ZQW0 420 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 NRARPQ7Z6K4 114 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 CDH24Q86UP0 819 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 GPR135Q8IZ08 494 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 ZFP41Q8N8Y5 198 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 C19orf18Q8NEA5 215 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 OR4C3Q8NH37 302 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 DOK4Q8TEW6 326 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 IRF2BPLQ9H1B7 796 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 ZNF768Q9H5H4 540 aaKnown RBP9.02□□□□□ -0.97
SS18-205ENST00000542420 ZNF304Q9HCX3 659 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 RYDENQ9NUL5 291 aaKnown RBP9.02□□□□□ -0.97
SS18-205ENST00000542420 RBFOX1Q9NWB1 397 aaKnown RBP9.02□□□□□ -0.97
SS18-205ENST00000542420 C14orf119Q9NWQ9 140 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 CA14Q9ULX7 337 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 TMEM184BQ9Y519 407 aaPredicted RBP9.02□□□□□ -0.97
SS18-205ENST00000542420 IER3IP1Q9Y5U9 82 aa9.02□□□□□ -0.97
SS18-205ENST00000542420 MPDZO75970 2070 aa9.01□□□□□ -0.97
SS18-205ENST00000542420 CCDC163A0A0D9SF12 145 aa9.01□□□□□ -0.97
SS18-205ENST00000542420 A0A1B0GX78 115 aa9.01□□□□□ -0.97
SS18-205ENST00000542420 ALG1L2C9J202 215 aa9.01□□□□□ -0.97
SS18-205ENST00000542420 MCIDASD6RGH6 385 aa9.01□□□□□ -0.97
SS18-205ENST00000542420 TSPAN2O60636 221 aa9.01□□□□□ -0.97
SS18-205ENST00000542420 ONECUT2O95948 504 aa9.01□□□□□ -0.97
SS18-205ENST00000542420 SLC2A2P11168 524 aaPredicted RBP9.01□□□□□ -0.97
SS18-205ENST00000542420 IGFBP4P22692 258 aa9.01□□□□□ -0.97
SS18-205ENST00000542420 SDHAP31040 664 aa9.01□□□□□ -0.97
SS18-205ENST00000542420 HOXA6P31267 233 aa9.01□□□□□ -0.97
SS18-205ENST00000542420 TALDO1P37837 337 aa9.01□□□□□ -0.97
SS18-205ENST00000542420 DLX5P56178 289 aa9.01□□□□□ -0.97
SS18-205ENST00000542420 EBPQ15125 230 aaKnown RBP9.01□□□□□ -0.97
SS18-205ENST00000542420 ZC3H14Q6PJT7 736 aaKnown RBP9.01□□□□□ -0.97
SS18-205ENST00000542420 FAM122BQ7Z309 247 aa9.01□□□□□ -0.97
SS18-205ENST00000542420 CCDC28AQ8IWP9 274 aa9.01□□□□□ -0.97
SS18-205ENST00000542420 FAM160A2Q8N612 972 aaPredicted RBP9.01□□□□□ -0.97
SS18-205ENST00000542420 FRMD1Q8N878 549 aa9.01□□□□□ -0.97
SS18-205ENST00000542420 ZNF441Q8N8Z8 693 aa9.01□□□□□ -0.97
SS18-205ENST00000542420 EXD3Q8N9H8 876 aa9.01□□□□□ -0.97
SS18-205ENST00000542420 MMP25Q9NPA2 562 aa9.01□□□□□ -0.97
SS18-205ENST00000542420 ZNF275Q9NSD4 429 aaPredicted RBP9.01□□□□□ -0.97
SS18-205ENST00000542420 C2orf42Q9NWW7 574 aa9.01□□□□□ -0.97
SS18-205ENST00000542420 SPEF1Q9Y4P9 236 aa9.01□□□□□ -0.97
SS18-205ENST00000542420 CLCA3PQ9Y6N3 262 aa9.01□□□□□ -0.97
SS18-205ENST00000542420 ADAMTS9Q9P2N4 1935 aa9.01□□□□□ -0.97
SS18-205ENST00000542420 IGLV3-12A0A075B6K2 115 aa9□□□□□ -0.97
SS18-205ENST00000542420 CD8B2A6NJW9 211 aa9□□□□□ -0.97
SS18-205ENST00000542420 PDCD5O14737 125 aa9□□□□□ -0.97
SS18-205ENST00000542420 REM1O75628 298 aa9□□□□□ -0.97
SS18-205ENST00000542420 ZNF432O94892 652 aa9□□□□□ -0.97
SS18-205ENST00000542420 TACSTD2P09758 323 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms