RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 RPS6KB2Q9UBS0 482 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 TESMINQ9Y4I5 508 aa11.51□□□□□ -0.57
VPS28-216ENST00000533806 SH3D21A4FU49 640 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 ELOA3DA6NLF2 546 aaPredicted RBP11.5□□□□□ -0.57
VPS28-216ENST00000533806 A6NNC1 897 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 AKR7A3O95154 331 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 PSMB1P20618 241 aaKnown RBP11.5□□□□□ -0.57
VPS28-216ENST00000533806 GSK3BP49841 420 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 PSME3P61289 254 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 OR7A5Q15622 319 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 ELOA3BQ3SY89 546 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 C5orf46Q6UWT4 87 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 GALNT5Q7Z7M9 940 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 RANBP3LQ86VV4 465 aaPredicted RBP11.5□□□□□ -0.57
VPS28-216ENST00000533806 FITM2Q8N6M3 262 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 ELOA3Q8NG57 546 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 OR6S1Q8NH40 331 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 TAAR8Q969N4 342 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 NAA11Q9BSU3 229 aaPredicted RBP11.5□□□□□ -0.57
VPS28-216ENST00000533806 ZNF426Q9BUY5 554 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 SF3B5Q9BWJ5 86 aaKnown RBP11.5□□□□□ -0.57
VPS28-216ENST00000533806 OR10A4Q9H209 315 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 ALG2Q9H553 416 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 RASSF1Q9NS23 344 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 ARL8BQ9NVJ2 186 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 SLC13A4Q9UKG4 626 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 ADAM21Q9UKJ8 722 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 FLVCR1Q9Y5Y0 555 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 AKAP9Q99996 3911 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 SPG11Q96JI7 2443 aa11.5□□□□□ -0.57
VPS28-216ENST00000533806 GPR171O14626 319 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 DCTN3O75935 186 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 CNOT4O95628 575 aaKnown RBP11.49□□□□□ -0.57
VPS28-216ENST00000533806 IFNA14P01570 189 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 THBDP07204 575 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 RPS5P46782 204 aaKnown RBP11.49□□□□□ -0.57
VPS28-216ENST00000533806 SELENOWP63302 87 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 LTBQ06643 244 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 P2RY6Q15077 328 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 FXNQ16595 210 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 EXOC3L2Q2M3D2 409 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 CYBRD1Q53TN4 286 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 ENTPD8Q5MY95 495 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 OTUD3Q5T2D3 398 aaPredicted RBP11.49□□□□□ -0.57
VPS28-216ENST00000533806 FAM69AQ5T7M9 428 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 NHLRC1Q6VVB1 395 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 WDR88Q6ZMY6 472 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 Q6ZT83 130 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 STK32CQ86UX6 486 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 SLC26A7Q8TE54 656 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 ADAMTS16Q8TE57 1224 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 SLC41A3Q96GZ6 507 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 TMEM43Q9BTV4 400 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 EMC3Q9P0I2 261 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 NDRG3Q9UGV2 375 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 PRSS50Q9UI38 385 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 BAG5Q9UL15 447 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 GPR52Q9Y2T5 361 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 SH3GLB1Q9Y371 365 aa11.49□□□□□ -0.57
VPS28-216ENST00000533806 TRAV36DV7A0A075B6V5 113 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 LOC102725191A0A1B0GVB3 256 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 TRAPPC13A5PLN9 417 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 NDUFAB1O14561 156 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 SIAH2O43255 324 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 CHP2O43745 196 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 OR2T1O43869 369 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 VAMP5O95183 116 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 GOSR1O95249 250 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 AHSA1O95433 338 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 BGLAPP02818 100 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 TNFRSF1BP20333 461 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 NCALDP61601 193 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 KRT72Q14CN4 511 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 POU4F3Q15319 338 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 SFRP5Q5T4F7 317 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 GKAP1Q5VSY0 366 aaPredicted RBP11.48□□□□□ -0.57
VPS28-216ENST00000533806 CXorf67Q86X51 503 aaPredicted RBP11.48□□□□□ -0.57
VPS28-216ENST00000533806 CARM1Q86X55 608 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 P3H2Q8IVL5 708 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 OR9K2Q8NGE7 335 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 VANGL1Q8TAA9 524 aaPredicted RBP11.48□□□□□ -0.57
VPS28-216ENST00000533806 PROX1Q92786 737 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 TMEM45BQ96B21 275 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 PRSS27Q9BQR3 290 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 TAPBPLQ9BX59 468 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 HDHD5Q9BXW7 423 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 KLHL4Q9C0H6 718 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 SPAG4Q9NPE6 437 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 ADPRHL2Q9NX46 363 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 B3GAT1Q9P2W7 334 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 SEC14L4Q9UDX3 406 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 MALT1Q9UDY8 824 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 CD300AQ9UGN4 299 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 TAGLN3Q9UI15 199 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 SLC9A8Q9Y2E8 581 aa11.48□□□□□ -0.57
VPS28-216ENST00000533806 NOSIPQ9Y314 301 aaKnown RBP11.48□□□□□ -0.57
VPS28-216ENST00000533806 A0A1W2PPR1 153 aa11.47□□□□□ -0.57
VPS28-216ENST00000533806 CPSF4LA6NMK7 179 aaKnown RBP11.47□□□□□ -0.57
VPS28-216ENST00000533806 DEFB108AA8MXU0 73 aa11.47□□□□□ -0.57
VPS28-216ENST00000533806 PDLIM1O00151 329 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms