RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	CDS1	Q92903	461 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	GCDH	Q92947	438 aa	Predicted RBP	10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	MTERF3	Q96E29	417 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	KCNS3	Q9BQ31	491 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	RBM4	Q9BWF3	364 aa	Known RBP	10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	PLK3	Q9H4B4	646 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	REEP4	Q9H6H4	257 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	ZCCHC3	Q9NUD5	404 aa	Known RBP	10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	PARPBP	Q9NWS1	579 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	MOK	Q9UQ07	419 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	SLC9A8	Q9Y2E8	581 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	NPIPA5	A0A0B4J1W7	369 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079		B4DSR2	109 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079		E9PBE3	544 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	NPIPA7	E9PJI5	369 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	NPIPB9	F8W1W9	429 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	TRIM77	I1YAP6	450 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	ANKRD28	O15084	1053 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	UBD	O15205	165 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	GYG2	O15488	501 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	MGRN1	O60291	552 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	LILRA1	O75019	489 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	CRCP	O75575	148 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	NPIPA8	P0DM63	369 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	COX4I1	P13073	169 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	DAO	P14920	347 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	MAGEA8	P43361	318 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	LIMS1	P48059	325 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	ELF3	P78545	371 aa	Predicted RBP	10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	SLC25A3	Q00325	362 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	SKP2	Q13309	424 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	LASP1	Q14847	261 aa	Known RBP	10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	MAPRE2	Q15555	327 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	GSTA3	Q16772	222 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	PDLIM3	Q53GG5	364 aa	Predicted RBP	10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	ZNF385B	Q569K4	471 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	XKR7	Q5GH72	579 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	CLEC6A	Q6EIG7	209 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	CASP12	Q6UXS9	341 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	GLCCI1	Q86VQ1	547 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	ARHGAP24	Q8N264	748 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	ZNF614	Q8N883	585 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	TSPEAR	Q8WU66	669 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	OIT3	Q8WWZ8	545 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	FAM120B	Q96EK7	910 aa	Known RBP	10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	OTUB1	Q96FW1	271 aa	Predicted RBP	10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	C16orf58	Q96GQ5	468 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	EGLN2	Q96KS0	407 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	FCRL1	Q96LA6	429 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	JMJD8	Q96S16	334 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	C1QTNF6	Q9BXI9	259 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	ACTRT3	Q9BYD9	372 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	METTL17	Q9H7H0	456 aa	Predicted RBP	10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	AKTIP	Q9H8T0	292 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	UPB1	Q9UBR1	384 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	HDGFL3	Q9Y3E1	203 aa		10.83	□□□□□ -0.68
CAPN1-223	ENST00000533079	SEC22B	O75396	215 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	CRYAA	P02489	173 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	LBP	P18428	481 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	PGC	P20142	388 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	MPG	P29372	298 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	IL2RG	P31785	369 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	APOBEC1	P41238	236 aa	Known RBP	10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	SLC1A3	P43003	542 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	CLK1	P49759	484 aa	Known RBP	10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	FOXA1	P55317	472 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	HILS1	P60008	231 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	LGALS3BP	Q08380	585 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	KIAA0040	Q15053	153 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	ADIPOQ	Q15848	244 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	NDUFAF6	Q330K2	333 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	C3orf36	Q3SXR2	165 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	NXN	Q6DKJ4	435 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	ANKRD26P1	Q6NSI1	321 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	R3HCC1L	Q7Z5L2	792 aa	Known RBP	10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	ZNF786	Q8N393	782 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	OR56A1	Q8NGH5	318 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	OR52E4	Q8NGH9	312 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	ADAMTS15	Q8TE58	950 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	UTP4	Q969X6	686 aa	Known RBP	10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	SLC38A2	Q96QD8	506 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	SNX18	Q96RF0	628 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	CADM1	Q9BY67	442 aa	Known RBP	10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	LAT2	Q9GZY6	243 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	TUBB1	Q9H4B7	451 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	ZNF696	Q9H7X3	374 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	NDE1	Q9NXR1	346 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	SH3BP4	Q9P0V3	963 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	CHRNA9	Q9UGM1	479 aa		10.82	□□□□□ -0.68
CAPN1-223	ENST00000533079	SERINC4	A6NH21	518 aa		10.81	□□□□□ -0.68
CAPN1-223	ENST00000533079	SLC28A1	O00337	649 aa		10.81	□□□□□ -0.68
CAPN1-223	ENST00000533079	PIP5K1B	O14986	540 aa		10.81	□□□□□ -0.68
CAPN1-223	ENST00000533079	EIF1B	O60739	113 aa	Known RBP	10.81	□□□□□ -0.68
CAPN1-223	ENST00000533079	OR4A8	P0C604	315 aa		10.81	□□□□□ -0.68
CAPN1-223	ENST00000533079	ASMT	P46597	345 aa		10.81	□□□□□ -0.68
CAPN1-223	ENST00000533079	SESN3	P58005	492 aa		10.81	□□□□□ -0.68
CAPN1-223	ENST00000533079	MERTK	Q12866	999 aa		10.81	□□□□□ -0.68
CAPN1-223	ENST00000533079	RIN1	Q13671	783 aa		10.81	□□□□□ -0.68
CAPN1-223	ENST00000533079	CYLC2	Q14093	348 aa	Predicted RBP	10.81	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms