RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 IFNA14P01570 189 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 POU2F1P14859 743 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 TLE4Q04727 773 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 LIPEQ05469 1076 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 OR1Q1Q15612 314 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 NPTX1Q15818 432 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 ZNF613Q6PF04 617 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 C5orf46Q6UWT4 87 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 BEND4Q6ZU67 534 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 NUFIP2Q7Z417 695 aaKnown RBP13.37□□□□□ -0.27
CPSF1-208ENST00000532560 OR6T1Q8NGN1 323 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 SLC38A4Q969I6 547 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 SLC47A1Q96FL8 570 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 ZNF300Q96RE9 604 aaPredicted RBP13.37□□□□□ -0.27
CPSF1-208ENST00000532560 MYCBPQ99417 103 aaPredicted RBP13.37□□□□□ -0.27
CPSF1-208ENST00000532560 NAA11Q9BSU3 229 aaPredicted RBP13.37□□□□□ -0.27
CPSF1-208ENST00000532560 TAPBPLQ9BX59 468 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 PCDHAC1Q9H158 963 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 DENND2DQ9H6A0 471 aaPredicted RBP13.37□□□□□ -0.27
CPSF1-208ENST00000532560 TAS2R1Q9NYW7 299 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 SELENONQ9NZV5 590 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 BAG5Q9UL15 447 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 SLC9A8Q9Y2E8 581 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 LRRC42Q9Y546 428 aa13.37□□□□□ -0.27
CPSF1-208ENST00000532560 FBN2P35556 2912 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 GPR171O14626 319 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 RAMP1O60894 148 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 AHSA1O95433 338 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 FPR1P21462 350 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 UGT2B10P36537 528 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 GSK3BP49841 420 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 PSME3P61289 254 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 EGR4Q05215 589 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 FAM27E3Q08E93 113 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 CEACAM7Q14002 265 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 OR7A5Q15622 319 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 GALNT5Q7Z7M9 940 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 OR4D11Q8NGI4 311 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 LINC01560Q8TB33 94 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 PROX1Q92786 737 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 STMN2Q93045 179 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 MCHR1Q99705 422 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 PTDSS2Q9BVG9 487 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 PRR14Q9BWN1 585 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 ALG2Q9H553 416 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 MCCC2Q9HCC0 563 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 SPAG4Q9NPE6 437 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 FANCFQ9NPI8 374 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 TESMINQ9Y4I5 508 aa13.36□□□□□ -0.27
CPSF1-208ENST00000532560 IGKV1D-42A0A075B6H8 117 aa13.35□□□□□ -0.27
CPSF1-208ENST00000532560 A0A087WUJ7 227 aa13.35□□□□□ -0.27
CPSF1-208ENST00000532560 AQP7P3A6NL99 342 aa13.35□□□□□ -0.27
CPSF1-208ENST00000532560 B2RBV5 119 aa13.35□□□□□ -0.27
CPSF1-208ENST00000532560 FTCDNL1E5RQL4 147 aa13.35□□□□□ -0.27
CPSF1-208ENST00000532560 C16orf97H3BN30 126 aa13.35□□□□□ -0.27
CPSF1-208ENST00000532560 GOSR1O95249 250 aa13.35□□□□□ -0.27
CPSF1-208ENST00000532560 EPXP11678 715 aa13.35□□□□□ -0.27
CPSF1-208ENST00000532560 KDELR2P33947 212 aa13.35□□□□□ -0.27
CPSF1-208ENST00000532560 OR3A2P47893 321 aa13.35□□□□□ -0.27
CPSF1-208ENST00000532560 DAZAP2Q15038 168 aaPredicted RBP13.35□□□□□ -0.27
CPSF1-208ENST00000532560 EXOC3L2Q2M3D2 409 aa13.35□□□□□ -0.27
CPSF1-208ENST00000532560 LRRC23Q53EV4 343 aaPredicted RBP13.35□□□□□ -0.27
CPSF1-208ENST00000532560 CYBRD1Q53TN4 286 aa13.35□□□□□ -0.27
CPSF1-208ENST00000532560 OTUD3Q5T2D3 398 aaPredicted RBP13.35□□□□□ -0.27
CPSF1-208ENST00000532560 LURAP1LQ8IV03 231 aa13.35□□□□□ -0.27
CPSF1-208ENST00000532560 CCDC103Q8IW40 242 aa13.35□□□□□ -0.27
CPSF1-208ENST00000532560 MFSD8Q8NHS3 518 aa13.35□□□□□ -0.27
CPSF1-208ENST00000532560 VANGL1Q8TAA9 524 aaPredicted RBP13.35□□□□□ -0.27
CPSF1-208ENST00000532560 DACH2Q96NX9 599 aa13.35□□□□□ -0.27
CPSF1-208ENST00000532560 SF3B5Q9BWJ5 86 aaKnown RBP13.35□□□□□ -0.27
CPSF1-208ENST00000532560 GMPR2Q9P2T1 348 aaKnown RBP13.35□□□□□ -0.27
CPSF1-208ENST00000532560 NDRG3Q9UGV2 375 aa13.35□□□□□ -0.27
CPSF1-208ENST00000532560 ITPR2Q14571 2701 aa13.35□□□□□ -0.27
CPSF1-208ENST00000532560 DCHS2Q6V1P9 2916 aa13.34□□□□□ -0.27
CPSF1-208ENST00000532560 SH3D21A4FU49 640 aa13.34□□□□□ -0.27
CPSF1-208ENST00000532560 CXCR6O00574 342 aa13.34□□□□□ -0.27
CPSF1-208ENST00000532560 CHP2O43745 196 aa13.34□□□□□ -0.27
CPSF1-208ENST00000532560 AKR7A3O95154 331 aa13.34□□□□□ -0.27
CPSF1-208ENST00000532560 VHLP40337 213 aa13.34□□□□□ -0.27
CPSF1-208ENST00000532560 P2RY4P51582 365 aa13.34□□□□□ -0.27
CPSF1-208ENST00000532560 CDH12P55289 794 aa13.34□□□□□ -0.27
CPSF1-208ENST00000532560 SLC17A1Q14916 467 aa13.34□□□□□ -0.27
CPSF1-208ENST00000532560 ENTPD8Q5MY95 495 aa13.34□□□□□ -0.27
CPSF1-208ENST00000532560 FAM69AQ5T7M9 428 aa13.34□□□□□ -0.27
CPSF1-208ENST00000532560 STAC2Q6ZMT1 411 aa13.34□□□□□ -0.27
CPSF1-208ENST00000532560 RINLQ6ZS11 566 aa13.34□□□□□ -0.27
CPSF1-208ENST00000532560 CARM1Q86X55 608 aa13.34□□□□□ -0.27
CPSF1-208ENST00000532560 RBM45Q8IUH3 476 aaKnown RBP13.34□□□□□ -0.27
CPSF1-208ENST00000532560 GABRG1Q8N1C3 465 aa13.34□□□□□ -0.27
CPSF1-208ENST00000532560 OR6S1Q8NH40 331 aa13.34□□□□□ -0.27
CPSF1-208ENST00000532560 ADAMTS16Q8TE57 1224 aa13.34□□□□□ -0.27
CPSF1-208ENST00000532560 KTI12Q96EK9 354 aaPredicted RBP13.34□□□□□ -0.27
CPSF1-208ENST00000532560 EPYCQ99645 322 aa13.34□□□□□ -0.27
CPSF1-208ENST00000532560 KCTD14Q9BQ13 255 aaPredicted RBP13.34□□□□□ -0.27
CPSF1-208ENST00000532560 TMEM43Q9BTV4 400 aa13.34□□□□□ -0.27
CPSF1-208ENST00000532560 POLR2J2Q9GZM3 115 aaKnown RBP13.34□□□□□ -0.27
CPSF1-208ENST00000532560 POLR2J3Q9H1A7 115 aaKnown RBP13.34□□□□□ -0.27
CPSF1-208ENST00000532560 OR10A4Q9H209 315 aa13.34□□□□□ -0.27
CPSF1-208ENST00000532560 ADPRHL2Q9NX46 363 aa13.34□□□□□ -0.27
CPSF1-208ENST00000532560 STX18Q9P2W9 335 aaKnown RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms