RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 FEN1P39748 380 aaKnown RBP3.1□□□□□ -1.91
CD44-235ENST00000532339 GEMP55040 296 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 PAX9P55771 341 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 GMFBP60983 142 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 POLR2FP61218 127 aaKnown RBP3.1□□□□□ -1.91
CD44-235ENST00000532339 HSPA14Q0VDF9 509 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 NCF4Q15080 339 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 IRF4Q15306 451 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 OR1C1Q15619 314 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 CAPN13Q6MZZ7 669 aaPredicted RBP3.1□□□□□ -1.91
CD44-235ENST00000532339 ZNF774Q6NX45 483 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 RFWD3Q6PCD5 774 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 PAQR6Q6TCH4 344 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 FIP1L1Q6UN15 594 aaKnown RBP3.1□□□□□ -1.91
CD44-235ENST00000532339 CWC27Q6UX04 472 aaKnown RBP3.1□□□□□ -1.91
CD44-235ENST00000532339 Q6ZVQ6 151 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 PAQR9Q6ZVX9 377 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 RFPL4BQ6ZWI9 263 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 STRADAQ7RTN6 431 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 SCD5Q86SK9 330 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 CATSPERDQ86XM0 798 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 SLC22A15Q8IZD6 547 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 DAW1Q8N136 415 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 CSGALNACT2Q8N6G5 542 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 CCDC197Q8NCU1 140 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 TMEM161BQ8NDZ6 487 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 OR6M1Q8NGM8 313 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 OR2A12Q8NGT7 310 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 OR6S1Q8NH40 331 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 OR4L1Q8NH43 312 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 C8orf46Q8TAG6 207 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 DQX1Q8TE96 717 aaKnown RBP3.1□□□□□ -1.91
CD44-235ENST00000532339 RAB39BQ96DA2 213 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 C16orf58Q96GQ5 468 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 NSMCE3Q96MG7 304 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 ERGIC2Q96RQ1 377 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 MED10Q9BTT4 135 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 GANQ9H2C0 597 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 MARCH7Q9H992 704 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 C3orf14Q9HBI5 128 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 CSNK1G1Q9HCP0 422 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 S100A14Q9HCY8 104 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 NGBQ9NPG2 151 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 FAM212BQ9NTI7 297 aaPredicted RBP3.1□□□□□ -1.91
CD44-235ENST00000532339 SOHLH2Q9NX45 425 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 TECRQ9NZ01 308 aaKnown RBP3.1□□□□□ -1.91
CD44-235ENST00000532339 PLCL2Q9UPR0 1127 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 SH3PXD2BA1X283 911 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 C15orf61A6NNL5 157 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 A8MXQ7 604 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 EEF2KO00418 725 aaKnown RBP3.09□□□□□ -1.91
CD44-235ENST00000532339 SCRG1O75711 98 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 KLF7O75840 302 aaPredicted RBP3.09□□□□□ -1.91
CD44-235ENST00000532339 OR6A2O95222 327 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 ANGPTL1O95841 491 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 TXNDC12O95881 172 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 CALCAP01258 141 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 PIGRP01833 764 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 GSTA2P09210 222 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 TPBGLP0DKB5 382 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 DESP17661 470 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 HNF1AP20823 631 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 PRDX6P30041 224 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 STIP1P31948 543 aaKnown RBP3.09□□□□□ -1.91
CD44-235ENST00000532339 ASMTP46597 345 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 ACOT2P49753 483 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 PLK1P53350 603 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 GFERP55789 205 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 MAP3K7CLP57077 242 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 SSTP61278 116 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 TFAMQ00059 246 aaKnown RBP3.09□□□□□ -1.91
CD44-235ENST00000532339 MS4A2Q01362 244 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 ACY1Q03154 408 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 EXOSC7Q15024 291 aaKnown RBP3.09□□□□□ -1.91
CD44-235ENST00000532339 NECTIN1Q15223 517 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 CLEC12BQ2HXU8 276 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 KLHL40Q2TBA0 621 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 WSCD2Q2TBF2 565 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 SLC25A35Q3KQZ1 300 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.09□□□□□ -1.91
CD44-235ENST00000532339 Q6ZRP5 223 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 ADCK1Q86TW2 530 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 SLC22A16Q86VW1 577 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 HOGA1Q86XE5 327 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 LMNTD2Q8IXW0 634 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 ARHGAP18Q8N392 663 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 OR5T2Q8NGG2 359 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 OR56B1Q8NGI3 324 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 OR4D10Q8NGI6 311 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 FAM57AQ8TBR7 257 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 SLC22A8Q8TCC7 542 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 HPDLQ96IR7 371 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 CXorf58Q96LI9 332 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 PRICKLE1Q96MT3 831 aaPredicted RBP3.09□□□□□ -1.91
CD44-235ENST00000532339 FOXN4Q96NZ1 517 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 TSGA13Q96PP4 275 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 USP28Q96RU2 1077 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 COQ7Q99807 217 aa3.09□□□□□ -1.91
CD44-235ENST00000532339 MRPL45Q9BRJ2 306 aaKnown RBP3.09□□□□□ -1.91
CD44-235ENST00000532339 FUNDC2Q9BWH2 189 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms