RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 PEX11GQ96HA9 241 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 OR2A7Q96R45 310 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 GINS4Q9BRT9 223 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 JAM3Q9BX67 310 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 ACTRT3Q9BYD9 372 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 DPH1Q9BZG8 443 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 WSB2Q9NYS7 404 aaPredicted RBP13.07□□□□□ -0.32
USP48-213ENST00000529637 CALML5Q9NZT1 146 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 SLC7A7Q9UM01 511 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 NPFFR2Q9Y5X5 522 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 NPIPA5A0A0B4J1W7 369 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 OR2W5A6NFC9 320 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 NPIPA7E9PJI5 369 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 KLF4O43474 513 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 RNGTTO60942 597 aaKnown RBP13.07□□□□□ -0.32
USP48-213ENST00000529637 ZIC2O95409 532 aaPredicted RBP13.07□□□□□ -0.32
USP48-213ENST00000529637 HIST1H2ABP04908 130 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 NPIPA8P0DM63 369 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 IFNGR1P15260 489 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 C4BPBP20851 252 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 PEBP1P30086 187 aaKnown RBP13.07□□□□□ -0.32
USP48-213ENST00000529637 STAT5AP42229 794 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 FNTBP49356 437 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 ZIC1Q15915 447 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 ENPP7Q6UWV6 458 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 HIST3H2AQ7L7L0 130 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 GDF7Q7Z4P5 450 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 SP7Q8TDD2 431 aaPredicted RBP13.07□□□□□ -0.32
USP48-213ENST00000529637 HIST1H2ACQ93077 130 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 OR14A2Q96R54 314 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 UQCC2Q9BRT2 126 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 TIMM29Q9BSF4 260 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 IFT27Q9BW83 186 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 SRMSQ9H3Y6 488 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 COL4A3Q01955 1670 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 LRRC72A6NJI9 287 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 ADH1BP00325 375 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 HPP00738 406 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 SLC35G6P0C7Q6 338 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 GKN3PP0CG01 181 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 IGFALSP35858 605 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 GPR85P60893 370 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 RAP2BP61225 183 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 FLI1Q01543 452 aaPredicted RBP13.07□□□□□ -0.32
USP48-213ENST00000529637 GK2Q14410 553 aaPredicted RBP13.07□□□□□ -0.32
USP48-213ENST00000529637 ARL14Q8N4G2 192 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 OR7G2Q8NG99 324 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 OR5M9Q8NGP3 310 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 STK35Q8TDR2 534 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 ACOT11Q8WXI4 607 aaPredicted RBP13.07□□□□□ -0.32
USP48-213ENST00000529637 MOAP1Q96BY2 351 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 APOOQ9BUR5 198 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 TMEM106CQ9BVX2 250 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 OR52D1Q9H346 318 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 FKRPQ9H9S5 495 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 ANKRD10Q9NXR5 420 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 TBC1D29Q9UFV1 150 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 LHX6Q9UPM6 363 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 COLEC10Q9Y6Z7 277 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 KHDRBS3O75525 346 aaKnown RBP13.06□□□□□ -0.32
USP48-213ENST00000529637 VSIG10L2P0DP72 767 aa13.06□□□□□ -0.32
USP48-213ENST00000529637 CALCRP30988 508 aa13.06□□□□□ -0.32
USP48-213ENST00000529637 ACTR1BP42025 376 aa13.06□□□□□ -0.32
USP48-213ENST00000529637 ACTR1AP61163 376 aa13.06□□□□□ -0.32
USP48-213ENST00000529637 PUS10Q3MIT2 529 aaKnown RBP13.06□□□□□ -0.32
USP48-213ENST00000529637 TP53I3Q53FA7 332 aa13.06□□□□□ -0.32
USP48-213ENST00000529637 PRPF38BQ5VTL8 546 aaKnown RBP13.06□□□□□ -0.32
USP48-213ENST00000529637 ZNF776Q68DI1 518 aaPredicted RBP13.06□□□□□ -0.32
USP48-213ENST00000529637 MRM1Q6IN84 353 aaKnown RBP13.06□□□□□ -0.32
USP48-213ENST00000529637 GJD3Q8N144 294 aa13.06□□□□□ -0.32
USP48-213ENST00000529637 WNT2BQ93097 391 aa13.06□□□□□ -0.32
USP48-213ENST00000529637 TEAD3Q99594 435 aa13.06□□□□□ -0.32
USP48-213ENST00000529637 PLA2G2FQ9BZM2 168 aa13.06□□□□□ -0.32
USP48-213ENST00000529637 RSPH9Q9H1X1 276 aaPredicted RBP13.06□□□□□ -0.32
USP48-213ENST00000529637 C20orf141Q9NUB4 165 aa13.06□□□□□ -0.32
USP48-213ENST00000529637 MED17Q9NVC6 651 aa13.06□□□□□ -0.32
USP48-213ENST00000529637 OPN4Q9UHM6 478 aa13.06□□□□□ -0.32
USP48-213ENST00000529637 ERVK-19Q9WJR5 959 aa13.06□□□□□ -0.32
USP48-213ENST00000529637 NUP210Q8TEM1 1887 aaPredicted RBP13.06□□□□□ -0.32
USP48-213ENST00000529637 CREBL2O60519 120 aaPredicted RBP13.06□□□□□ -0.32
USP48-213ENST00000529637 PRAF2O60831 178 aa13.06□□□□□ -0.32
USP48-213ENST00000529637 EML2O95834 649 aa13.06□□□□□ -0.32
USP48-213ENST00000529637 ATP1B1P05026 303 aa13.06□□□□□ -0.32
USP48-213ENST00000529637 ZNF35P13682 527 aa13.06□□□□□ -0.32
USP48-213ENST00000529637 PPP3CBP16298 524 aa13.06□□□□□ -0.32
USP48-213ENST00000529637 MAT1AQ00266 395 aaKnown RBP13.06□□□□□ -0.32
USP48-213ENST00000529637 PABPC1L2AQ5JQF8 200 aa13.06□□□□□ -0.32
USP48-213ENST00000529637 B3GNTL1Q67FW5 361 aaPredicted RBP13.06□□□□□ -0.32
USP48-213ENST00000529637 ZNF626Q68DY1 528 aa13.06□□□□□ -0.32
USP48-213ENST00000529637 DMKNQ6E0U4 476 aaPredicted RBP13.06□□□□□ -0.32
USP48-213ENST00000529637 FAM109BQ6ICB4 259 aaPredicted RBP13.06□□□□□ -0.32
USP48-213ENST00000529637 FAM199XQ6PEV8 388 aaPredicted RBP13.06□□□□□ -0.32
USP48-213ENST00000529637 LRRC25Q8N386 305 aaPredicted RBP13.06□□□□□ -0.32
USP48-213ENST00000529637 SLC44A3Q8N4M1 653 aa13.06□□□□□ -0.32
USP48-213ENST00000529637 TSACCQ96A04 125 aaPredicted RBP13.06□□□□□ -0.32
USP48-213ENST00000529637 ZNF764Q96H86 408 aaPredicted RBP13.06□□□□□ -0.32
USP48-213ENST00000529637 ADAT1Q9BUB4 502 aaKnown RBP13.06□□□□□ -0.32
USP48-213ENST00000529637 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.05□□□□□ -0.32
USP48-213ENST00000529637 OR6C74A6NCV1 312 aa13.05□□□□□ -0.32
USP48-213ENST00000529637 POM121BA6NF01 834 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms