RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 PPP4R4Q6NUP7 873 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 C1orf94Q6P1W5 598 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 TTC33Q6PID6 262 aaPredicted RBP6.68□□□□□ -1.34
CD44-228ENST00000528455 C5orf46Q6UWT4 87 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 ZBTB49Q6ZSB9 765 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 ASB18Q6ZVZ8 466 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 PLEKHM3Q6ZWE6 761 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 MBOAT2Q6ZWT7 520 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.68□□□□□ -1.34
CD44-228ENST00000528455 ATG4DQ86TL0 474 aaPredicted RBP6.68□□□□□ -1.34
CD44-228ENST00000528455 SLC22A16Q86VW1 577 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 CDK20Q8IZL9 346 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 CADM2Q8N3J6 435 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 GTPBP8Q8N3Z3 284 aaPredicted RBP6.68□□□□□ -1.34
CD44-228ENST00000528455 TMCO5AQ8N6Q1 288 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 RBMXL3Q8N7X1 1067 aaKnown RBP6.68□□□□□ -1.34
CD44-228ENST00000528455 OR4C15Q8NGM1 316 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 GIPC3Q8TF64 312 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 C3orf49Q96BT1 292 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 PSD2Q9BQI7 771 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 PIGQQ9BRB3 760 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 TMEM43Q9BTV4 400 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 C9orf16Q9BUW7 83 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 ZNF426Q9BUY5 554 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 KRTAP4-6Q9BYQ5 205 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 POTEKPQ9BYX7 375 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 KLHL4Q9C0H6 718 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 KLHL1Q9NR64 748 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 MAN2C1Q9NTJ4 1040 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 MED17Q9NVC6 651 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 RHCGQ9UBD6 479 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 B4GALT7Q9UBV7 327 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 OSGIN1Q9UJX0 560 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 FBXL2Q9UKC9 423 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 SLC7A7Q9UM01 511 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 TP53TG5Q9Y2B4 290 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 C15orf41Q9Y2V0 281 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 SAMHD1Q9Y3Z3 626 aaKnown RBP6.68□□□□□ -1.34
CD44-228ENST00000528455 TESMINQ9Y4I5 508 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 LYVE1Q9Y5Y7 322 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 SETXQ7Z333 2677 aaKnown RBP6.68□□□□□ -1.34
CD44-228ENST00000528455 UBR5O95071 2799 aaPredicted RBP6.68□□□□□ -1.34
CD44-228ENST00000528455 TMED7-TICAM2A0A0A6YYA0 188 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 TRBV4-1A0A0J9YWV2 114 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 PINLYPA6NC86 204 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 NOTOA8MTQ0 251 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 A8MVM7 634 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 OR2T1O43869 369 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 EFNA2O43921 213 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 E2F6O75461 281 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 CCNB2O95067 398 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 RASAL1O95294 804 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 ZNF17P17021 662 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 ZNF26P17031 533 aaPredicted RBP6.67□□□□□ -1.34
CD44-228ENST00000528455 HK1P19367 917 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 MST1P26927 711 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 KIR2DL2P43627 348 aaPredicted RBP6.67□□□□□ -1.34
CD44-228ENST00000528455 MEOX1P50221 254 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 CCR4P51679 360 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 CTBP2P56545 445 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 GPR85P60893 370 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 SPIBQ01892 262 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 MERTKQ12866 999 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 INAQ16352 499 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 BCL2A1Q16548 175 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 XP32Q5T750 250 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 OGFRL1Q5TC84 451 aaPredicted RBP6.67□□□□□ -1.34
CD44-228ENST00000528455 ZNF770Q6IQ21 691 aaPredicted RBP6.67□□□□□ -1.34
CD44-228ENST00000528455 PODNL1Q6PEZ8 512 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 ARSKQ6UWY0 536 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 CD300LDQ6UXZ3 194 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 ZNF730Q6ZMV8 503 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 TMPRSS11FQ6ZWK6 438 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 TMEM179BQ7Z7N9 219 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 NKAIN4Q8IVV8 208 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 FAM109AQ8N4B1 249 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 PACRGLQ8N7B6 248 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 OR6S1Q8NH40 331 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 OR52J3Q8NH60 311 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 POC1BQ8TC44 478 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 TMEM239Q8WW34 195 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 LIPHQ8WWY8 451 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 DNAJC9Q8WXX5 260 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 EME1Q96AY2 570 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 ZNF524Q96C55 264 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 JSRP1Q96MG2 331 aaPredicted RBP6.67□□□□□ -1.34
CD44-228ENST00000528455 HES7Q9BYE0 225 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 TTTY12Q9BZ98 90 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 OR2B2Q9GZK3 357 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 SEMA6AQ9H2E6 1030 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 VCX3BQ9H321 246 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 KRCC1Q9NPI7 259 aaPredicted RBP6.67□□□□□ -1.34
CD44-228ENST00000528455 PDP1Q9P0J1 537 aaPredicted RBP6.67□□□□□ -1.34
CD44-228ENST00000528455 TNFRSF10DQ9UBN6 386 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 PFDN2Q9UHV9 154 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 MGAT4BQ9UQ53 548 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 TRAPPC4Q9Y296 219 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 NTNG1Q9Y2I2 539 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 TMED7Q9Y3B3 224 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 MED31Q9Y3C7 131 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms