RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 ADGRL4Q9HBW9 690 aa18.8■□□□□ 0.6
VPS28-209ENST00000528142 GALNT9Q9HCQ5 603 aa18.8■□□□□ 0.6
VPS28-209ENST00000528142 STUB1Q9UNE7 303 aa18.8■□□□□ 0.6
VPS28-209ENST00000528142 TRAV36DV7A0A075B6V5 113 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 TMED7-TICAM2A0A0A6YYA0 188 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 C2orf72A6NCS6 295 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 ANKUB1A6NFN9 424 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 C12orf71A8MTZ7 269 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 LALBAP00709 142 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 APEHP13798 732 aaKnown RBP18.79■□□□□ 0.6
VPS28-209ENST00000528142 OPRL1P41146 370 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 RPS5P46782 204 aaKnown RBP18.79■□□□□ 0.6
VPS28-209ENST00000528142 RAB15P59190 212 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 RPS7P62081 194 aaKnown RBP18.79■□□□□ 0.6
VPS28-209ENST00000528142 INSM1Q01101 510 aaPredicted RBP18.79■□□□□ 0.6
VPS28-209ENST00000528142 C1QL3Q5VWW1 255 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 FAM122BQ7Z309 247 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 SLC22A8Q8TCC7 542 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 TRMT61AQ96FX7 289 aaKnown RBP18.79■□□□□ 0.6
VPS28-209ENST00000528142 PTDSS2Q9BVG9 487 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 KLHL1Q9NR64 748 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 TMED7Q9Y3B3 224 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 SF3B6Q9Y3B4 125 aaKnown RBP18.79■□□□□ 0.6
VPS28-209ENST00000528142 TMEM72A0PK05 275 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 STK17BO94768 372 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 GYPBP06028 91 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 CD14P08571 375 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 SBK2P0C263 348 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 PTGDSP41222 190 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 TMED10P49755 219 aaKnown RBP18.79■□□□□ 0.6
VPS28-209ENST00000528142 SUMO3P55854 103 aaPredicted RBP18.79■□□□□ 0.6
VPS28-209ENST00000528142 ZNF791Q3KP31 576 aaPredicted RBP18.79■□□□□ 0.6
VPS28-209ENST00000528142 OR5M10Q6IEU7 315 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 POMZP3Q6PJE2 187 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 ZNF322Q6U7Q0 402 aaPredicted RBP18.79■□□□□ 0.6
VPS28-209ENST00000528142 SLC15A4Q8N697 577 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 OR6Q1Q8NGQ2 317 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 SPRYD4Q8WW59 207 aaPredicted RBP18.79■□□□□ 0.6
VPS28-209ENST00000528142 RASL10BQ96S79 203 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 NMNAT2Q9BZQ4 307 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 STRADBQ9C0K7 418 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 INPP5EQ9NRR6 644 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 SLC6A5Q9Y345 797 aa18.79■□□□□ 0.6
VPS28-209ENST00000528142 CAB39Q9Y376 341 aaPredicted RBP18.79■□□□□ 0.6
VPS28-209ENST00000528142 PMS2P1A4D2B8 440 aa18.78■□□□□ 0.6
VPS28-209ENST00000528142 METTL15A6NJ78 407 aa18.78■□□□□ 0.6
VPS28-209ENST00000528142 SUSD5O60279 629 aa18.78■□□□□ 0.6
VPS28-209ENST00000528142 SLC16A1P53985 500 aa18.78■□□□□ 0.6
VPS28-209ENST00000528142 DLX5P56178 289 aa18.78■□□□□ 0.6
VPS28-209ENST00000528142 E2F1Q01094 437 aa18.78■□□□□ 0.6
VPS28-209ENST00000528142 EXT1Q16394 746 aa18.78■□□□□ 0.6
VPS28-209ENST00000528142 CCDC157Q569K6 752 aa18.78■□□□□ 0.6
VPS28-209ENST00000528142 ALG10Q5BKT4 473 aa18.78■□□□□ 0.6
VPS28-209ENST00000528142 CDCP2Q5VXM1 449 aa18.78■□□□□ 0.6
VPS28-209ENST00000528142 BICRALQ6AI39 1079 aa18.78■□□□□ 0.6
VPS28-209ENST00000528142 RAB11FIP2Q7L804 512 aa18.78■□□□□ 0.6
VPS28-209ENST00000528142 RASD2Q96D21 266 aa18.78■□□□□ 0.6
VPS28-209ENST00000528142 NMNAT3Q96T66 252 aa18.78■□□□□ 0.6
VPS28-209ENST00000528142 CCDC59Q9P031 241 aaKnown RBP18.78■□□□□ 0.6
VPS28-209ENST00000528142 MUC6Q6W4X9 2439 aa18.77■□□□□ 0.6
VPS28-209ENST00000528142 A0A1W2PQ72 361 aa18.77■□□□□ 0.6
VPS28-209ENST00000528142 A8MVM7 634 aa18.77■□□□□ 0.6
VPS28-209ENST00000528142 IMPA2O14732 288 aa18.77■□□□□ 0.6
VPS28-209ENST00000528142 TXNDC12O95881 172 aa18.77■□□□□ 0.6
VPS28-209ENST00000528142 CELA2AP08217 269 aa18.77■□□□□ 0.6
VPS28-209ENST00000528142 HTR3AP46098 478 aa18.77■□□□□ 0.6
VPS28-209ENST00000528142 RPL18Q07020 188 aaKnown RBP18.77■□□□□ 0.6
VPS28-209ENST00000528142 NTRK2Q16620 822 aa18.77■□□□□ 0.6
VPS28-209ENST00000528142 OR10G3Q8NGC4 313 aa18.77■□□□□ 0.6
VPS28-209ENST00000528142 ZPLD1Q8TCW7 415 aa18.77■□□□□ 0.6
VPS28-209ENST00000528142 TMEM234Q8WY98 164 aa18.77■□□□□ 0.6
VPS28-209ENST00000528142 UFD1Q92890 307 aa18.77■□□□□ 0.6
VPS28-209ENST00000528142 Q96M85 177 aa18.77■□□□□ 0.6
VPS28-209ENST00000528142 ZPBPQ9BS86 351 aa18.77■□□□□ 0.6
VPS28-209ENST00000528142 NXF2Q9GZY0 626 aaKnown RBP18.77■□□□□ 0.6
VPS28-209ENST00000528142 HRH3Q9Y5N1 445 aa18.77■□□□□ 0.6
VPS28-209ENST00000528142 TEX13CA0A0J9YWL9 993 aa18.77■□□□□ 0.59
VPS28-209ENST00000528142 OR6C68A6NDL8 312 aa18.77■□□□□ 0.59
VPS28-209ENST00000528142 C4orf47A7E2U8 309 aa18.77■□□□□ 0.59
VPS28-209ENST00000528142 PLD2O14939 933 aa18.77■□□□□ 0.59
VPS28-209ENST00000528142 MT-ATP6P00846 226 aa18.77■□□□□ 0.59
VPS28-209ENST00000528142 PRKCAP17252 672 aa18.77■□□□□ 0.59
VPS28-209ENST00000528142 FOLR3P41439 243 aa18.77■□□□□ 0.59
VPS28-209ENST00000528142 CLDN6P56747 220 aa18.77■□□□□ 0.59
VPS28-209ENST00000528142 CTXN1P60606 82 aa18.77■□□□□ 0.59
VPS28-209ENST00000528142 POU4F2Q12837 409 aa18.77■□□□□ 0.59
VPS28-209ENST00000528142 GALEQ14376 348 aa18.77■□□□□ 0.59
VPS28-209ENST00000528142 NANOGNBQ7Z5D8 188 aa18.77■□□□□ 0.59
VPS28-209ENST00000528142 M1APQ8TC57 530 aa18.77■□□□□ 0.59
VPS28-209ENST00000528142 ST8SIA1Q92185 356 aa18.77■□□□□ 0.59
VPS28-209ENST00000528142 BORCS5Q969J3 196 aa18.77■□□□□ 0.59
VPS28-209ENST00000528142 SPACA9Q96E40 222 aaPredicted RBP18.77■□□□□ 0.59
VPS28-209ENST00000528142 TAAR9Q96RI9 348 aa18.77■□□□□ 0.59
VPS28-209ENST00000528142 ALG8Q9BVK2 526 aa18.77■□□□□ 0.59
VPS28-209ENST00000528142 CDADC1Q9BWV3 514 aa18.77■□□□□ 0.59
VPS28-209ENST00000528142 ISG20L2Q9H9L3 353 aaKnown RBP18.77■□□□□ 0.59
VPS28-209ENST00000528142 EXOSC4Q9NPD3 245 aaKnown RBP18.77■□□□□ 0.59
VPS28-209ENST00000528142 AKIP1Q9NQ31 210 aa18.77■□□□□ 0.59
VPS28-209ENST00000528142 MED11Q9P086 117 aa18.77■□□□□ 0.59
VPS28-209ENST00000528142 PADI1Q9ULC6 663 aa18.77■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms