RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	PIP5K1A	Q99755	562 aa		18.55	■□□□□ 0.56
CD44-222	ENST00000526025	TACO1	Q9BSH4	297 aa	Known RBP	18.55	■□□□□ 0.56
CD44-222	ENST00000526025	NAA11	Q9BSU3	229 aa	Predicted RBP	18.55	■□□□□ 0.56
CD44-222	ENST00000526025	SFXN3	Q9BWM7	321 aa		18.55	■□□□□ 0.56
CD44-222	ENST00000526025	MAN2C1	Q9NTJ4	1040 aa		18.55	■□□□□ 0.56
CD44-222	ENST00000526025		Q9UFV3	132 aa		18.55	■□□□□ 0.56
CD44-222	ENST00000526025		V9GYQ6	96 aa		18.55	■□□□□ 0.56
CD44-222	ENST00000526025		A0A1W2PRQ8	180 aa		18.54	■□□□□ 0.56
CD44-222	ENST00000526025	TCRBV3S1	A0A5B6	114 aa		18.54	■□□□□ 0.56
CD44-222	ENST00000526025		J3KTA2	159 aa		18.54	■□□□□ 0.56
CD44-222	ENST00000526025	SMAD9	O15198	467 aa	Known RBP	18.54	■□□□□ 0.56
CD44-222	ENST00000526025	TMIGD3	P0DMS9	266 aa	Predicted RBP	18.54	■□□□□ 0.56
CD44-222	ENST00000526025	CTSS	P25774	331 aa		18.54	■□□□□ 0.56
CD44-222	ENST00000526025	SMIM11A	P58511	58 aa		18.54	■□□□□ 0.56
CD44-222	ENST00000526025	CHRNB3	Q05901	458 aa		18.54	■□□□□ 0.56
CD44-222	ENST00000526025	DGCR6	Q14129	220 aa		18.54	■□□□□ 0.56
CD44-222	ENST00000526025	NCCRP1	Q6ZVX7	275 aa	Predicted RBP	18.54	■□□□□ 0.56
CD44-222	ENST00000526025	NAXE	Q8NCW5	288 aa		18.54	■□□□□ 0.56
CD44-222	ENST00000526025	PIGX	Q8TBF5	258 aa		18.54	■□□□□ 0.56
CD44-222	ENST00000526025	SSC4D	Q8WTU2	575 aa		18.54	■□□□□ 0.56
CD44-222	ENST00000526025	KLHL4	Q9C0H6	718 aa		18.54	■□□□□ 0.56
CD44-222	ENST00000526025	NMNAT1	Q9HAN9	279 aa	Predicted RBP	18.54	■□□□□ 0.56
CD44-222	ENST00000526025	KLHL9	Q9P2J3	617 aa		18.54	■□□□□ 0.56
CD44-222	ENST00000526025	RNF6	Q9Y252	685 aa		18.54	■□□□□ 0.56
CD44-222	ENST00000526025	CORIN	Q9Y5Q5	1042 aa		18.54	■□□□□ 0.56
CD44-222	ENST00000526025	hCG_2039718	K7EN88	272 aa		18.53	■□□□□ 0.56
CD44-222	ENST00000526025	ZG16	O60844	167 aa		18.53	■□□□□ 0.56
CD44-222	ENST00000526025	SS18L1	O75177	396 aa	Predicted RBP	18.53	■□□□□ 0.56
CD44-222	ENST00000526025	MT-ATP6	P00846	226 aa		18.53	■□□□□ 0.56
CD44-222	ENST00000526025	H1F0	P07305	194 aa	Known RBP	18.53	■□□□□ 0.56
CD44-222	ENST00000526025	RAP2A	P10114	183 aa		18.53	■□□□□ 0.56
CD44-222	ENST00000526025	FPR1	P21462	350 aa		18.53	■□□□□ 0.56
CD44-222	ENST00000526025	OPRM1	P35372	400 aa		18.53	■□□□□ 0.56
CD44-222	ENST00000526025	RPS5	P46782	204 aa	Known RBP	18.53	■□□□□ 0.56
CD44-222	ENST00000526025	YAP1	P46937	504 aa	Known RBP	18.53	■□□□□ 0.56
CD44-222	ENST00000526025	SLC16A1	P53985	500 aa		18.53	■□□□□ 0.56
CD44-222	ENST00000526025	OR7A5	Q15622	319 aa		18.53	■□□□□ 0.56
CD44-222	ENST00000526025	MRGPRG	Q86SM5	289 aa		18.53	■□□□□ 0.56
CD44-222	ENST00000526025	ZDHHC21	Q8IVQ6	265 aa		18.53	■□□□□ 0.56
CD44-222	ENST00000526025	NKAIN4	Q8IVV8	208 aa		18.53	■□□□□ 0.56
CD44-222	ENST00000526025	RNF113B	Q8IZP6	322 aa	Known RBP	18.53	■□□□□ 0.56
CD44-222	ENST00000526025	SCAI	Q8N9R8	606 aa		18.53	■□□□□ 0.56
CD44-222	ENST00000526025	ADPRHL1	Q8NDY3	354 aa		18.53	■□□□□ 0.56
CD44-222	ENST00000526025	TMEM239	Q8WW34	195 aa		18.53	■□□□□ 0.56
CD44-222	ENST00000526025	TAAR8	Q969N4	342 aa		18.53	■□□□□ 0.56
CD44-222	ENST00000526025	BCO1	Q9HAY6	547 aa		18.53	■□□□□ 0.56
CD44-222	ENST00000526025	IGKV3D-15	A0A087WSY6	115 aa		18.52	■□□□□ 0.56
CD44-222	ENST00000526025	DHRS12	A0PJE2	317 aa		18.52	■□□□□ 0.56
CD44-222	ENST00000526025	AQP7P3	A6NL99	342 aa		18.52	■□□□□ 0.56
CD44-222	ENST00000526025	VAMP5	O95183	116 aa		18.52	■□□□□ 0.56
CD44-222	ENST00000526025	BGLAP	P02818	100 aa		18.52	■□□□□ 0.56
CD44-222	ENST00000526025	MT-ND1	P03886	318 aa		18.52	■□□□□ 0.56
CD44-222	ENST00000526025	SLC25A35	Q3KQZ1	300 aa		18.52	■□□□□ 0.56
CD44-222	ENST00000526025	FAM214B	Q7L5A3	538 aa		18.52	■□□□□ 0.56
CD44-222	ENST00000526025	MCEMP1	Q8IX19	187 aa		18.52	■□□□□ 0.56
CD44-222	ENST00000526025	ADGRG5	Q8IZF4	528 aa		18.52	■□□□□ 0.56
CD44-222	ENST00000526025	LILRB4	Q8NHJ6	448 aa		18.52	■□□□□ 0.56
CD44-222	ENST00000526025	TMEM255B	Q8WV15	326 aa		18.52	■□□□□ 0.56
CD44-222	ENST00000526025	ACOT11	Q8WXI4	607 aa	Predicted RBP	18.52	■□□□□ 0.56
CD44-222	ENST00000526025	ROBO4	Q8WZ75	1007 aa		18.52	■□□□□ 0.56
CD44-222	ENST00000526025	SEPHS2	Q99611	448 aa		18.52	■□□□□ 0.56
CD44-222	ENST00000526025	SF3B5	Q9BWJ5	86 aa	Known RBP	18.52	■□□□□ 0.56
CD44-222	ENST00000526025	KLHL13	Q9P2N7	655 aa		18.52	■□□□□ 0.56
CD44-222	ENST00000526025	B3GALT5	Q9Y2C3	310 aa		18.52	■□□□□ 0.56
CD44-222	ENST00000526025	MED31	Q9Y3C7	131 aa		18.52	■□□□□ 0.56
CD44-222	ENST00000526025		A0A1W2PNV4	684 aa		18.51	■□□□□ 0.55
CD44-222	ENST00000526025	ZNF724	A8MTY0	619 aa		18.51	■□□□□ 0.55
CD44-222	ENST00000526025	DVL2	O14641	736 aa		18.51	■□□□□ 0.55
CD44-222	ENST00000526025	CIB2	O75838	187 aa		18.51	■□□□□ 0.55
CD44-222	ENST00000526025	TNFSF13	O75888	250 aa		18.51	■□□□□ 0.55
CD44-222	ENST00000526025	GTF2E2	P29084	291 aa	Known RBP	18.51	■□□□□ 0.55
CD44-222	ENST00000526025	UGT2B15	P54855	530 aa		18.51	■□□□□ 0.55
CD44-222	ENST00000526025	ZNF74	Q16587	644 aa		18.51	■□□□□ 0.55
CD44-222	ENST00000526025	C1orf146	Q5VVC0	180 aa		18.51	■□□□□ 0.55
CD44-222	ENST00000526025	PPP4R4	Q6NUP7	873 aa		18.51	■□□□□ 0.55
CD44-222	ENST00000526025	PLXDC2	Q6UX71	529 aa		18.51	■□□□□ 0.55
CD44-222	ENST00000526025	ABHD3	Q8WU67	409 aa		18.51	■□□□□ 0.55
CD44-222	ENST00000526025	LIPH	Q8WWY8	451 aa		18.51	■□□□□ 0.55
CD44-222	ENST00000526025	UTP4	Q969X6	686 aa	Known RBP	18.51	■□□□□ 0.55
CD44-222	ENST00000526025	SDCCAG3	Q96C92	435 aa		18.51	■□□□□ 0.55
CD44-222	ENST00000526025	INTS12	Q96CB8	462 aa	Known RBP	18.51	■□□□□ 0.55
CD44-222	ENST00000526025	PSD2	Q9BQI7	771 aa		18.51	■□□□□ 0.55
CD44-222	ENST00000526025	FKRP	Q9H9S5	495 aa		18.51	■□□□□ 0.55
CD44-222	ENST00000526025	MEPE	Q9NQ76	525 aa	Predicted RBP	18.51	■□□□□ 0.55
CD44-222	ENST00000526025	MRPL39	Q9NYK5	338 aa	Known RBP	18.51	■□□□□ 0.55
CD44-222	ENST00000526025	EMC9	Q9Y3B6	208 aa		18.51	■□□□□ 0.55
CD44-222	ENST00000526025	KRT36	O76013	467 aa		18.5	■□□□□ 0.55
CD44-222	ENST00000526025	PLG	P00747	810 aa	Predicted RBP	18.5	■□□□□ 0.55
CD44-222	ENST00000526025	P2RY4	P51582	365 aa		18.5	■□□□□ 0.55
CD44-222	ENST00000526025	CTBP2	P56545	445 aa		18.5	■□□□□ 0.55
CD44-222	ENST00000526025	RASGEF1B	Q0VAM2	473 aa		18.5	■□□□□ 0.55
CD44-222	ENST00000526025	GK3P	Q14409	553 aa		18.5	■□□□□ 0.55
CD44-222	ENST00000526025	POU4F3	Q15319	338 aa		18.5	■□□□□ 0.55
CD44-222	ENST00000526025	OTUD3	Q5T2D3	398 aa	Predicted RBP	18.5	■□□□□ 0.55
CD44-222	ENST00000526025	MAMDC2	Q7Z304	686 aa	Predicted RBP	18.5	■□□□□ 0.55
CD44-222	ENST00000526025	SPATA24	Q86W54	205 aa		18.5	■□□□□ 0.55
CD44-222	ENST00000526025	CCDC71	Q8IV32	467 aa	Predicted RBP	18.5	■□□□□ 0.55
CD44-222	ENST00000526025	P3H2	Q8IVL5	708 aa		18.5	■□□□□ 0.55
CD44-222	ENST00000526025	PAPD5	Q8NDF8	572 aa	Known RBP	18.5	■□□□□ 0.55
CD44-222	ENST00000526025	SLC7A13	Q8TCU3	470 aa		18.5	■□□□□ 0.55

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