RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 TRIP13Q15645 432 aaPredicted RBP2.98□□□□□ -1.93
CD44-217ENST00000525348 SSX2Q16385 188 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 MEP1BQ16820 701 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 TWISTNBQ3B726 338 aaPredicted RBP2.98□□□□□ -1.93
CD44-217ENST00000525348 BEX5Q5H9J7 111 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 ZNF506Q5JVG8 444 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 MFSD14CQ5VZR4 134 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 ADNP2Q6IQ32 1131 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 SLC27A4Q6P1M0 643 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 BAIAP2L2Q6UXY1 529 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 TMIGD1Q6UXZ0 262 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 GDPD3Q7L5L3 318 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 SNX20Q7Z614 316 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 NET1Q7Z628 596 aaPredicted RBP2.98□□□□□ -1.93
CD44-217ENST00000525348 MEX3DQ86XN8 651 aaKnown RBP2.98□□□□□ -1.93
CD44-217ENST00000525348 SLC13A5Q86YT5 568 aaPredicted RBP2.98□□□□□ -1.93
CD44-217ENST00000525348 CLYBLQ8N0X4 340 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 CENPSQ8N2Z9 138 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 ZNF786Q8N393 782 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 ZNRF1Q8ND25 227 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 OR2L3Q8NG85 312 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 TOP1MTQ969P6 601 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 CPNE4Q96A23 557 aaPredicted RBP2.98□□□□□ -1.93
CD44-217ENST00000525348 SIPA1Q96FS4 1042 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 ZNF317Q96PQ6 595 aaPredicted RBP2.98□□□□□ -1.93
CD44-217ENST00000525348 ALKBH3Q96Q83 286 aaPredicted RBP2.98□□□□□ -1.93
CD44-217ENST00000525348 XPO6Q96QU8 1125 aaKnown RBP2.98□□□□□ -1.93
CD44-217ENST00000525348 TAAR1Q96RJ0 339 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 INTS14Q96SY0 518 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 PRMT1Q99873 361 aaKnown RBP2.98□□□□□ -1.93
CD44-217ENST00000525348 PELOQ9BRX2 385 aaKnown RBP2.98□□□□□ -1.93
CD44-217ENST00000525348 FAM213AQ9BRX8 229 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 TMEM175Q9BSA9 504 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 CHID1Q9BWS9 393 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 MFFQ9GZY8 342 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 TOLLIPQ9H0E2 274 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 SAV1Q9H4B6 383 aaPredicted RBP2.98□□□□□ -1.93
CD44-217ENST00000525348 ARMC7Q9H6L4 198 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 PLEKHA3Q9HB20 300 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 MYOZ1Q9NP98 299 aaPredicted RBP2.98□□□□□ -1.93
CD44-217ENST00000525348 IFT46Q9NQC8 304 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 ABCB10Q9NRK6 738 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 PNPLA3Q9NST1 481 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 EXD2Q9NVH0 621 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 KLHL28Q9NXS3 571 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 ADAM22Q9P0K1 906 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 TRPC4Q9UBN4 977 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 WARS2Q9UGM6 360 aaKnown RBP2.98□□□□□ -1.93
CD44-217ENST00000525348 TRMT6Q9UJA5 497 aaKnown RBP2.98□□□□□ -1.93
CD44-217ENST00000525348 STAP1Q9ULZ2 295 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 COPS3Q9UNS2 423 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 VSIG4Q9Y279 399 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 SLC9A8Q9Y2E8 581 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 NDUFAF1Q9Y375 327 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 AUP1Q9Y679 476 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 BLMP54132 1417 aaPredicted RBP2.98□□□□□ -1.93
CD44-217ENST00000525348 FGD6Q6ZV73 1430 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 MYO5BQ9ULV0 1848 aa2.98□□□□□ -1.93
CD44-217ENST00000525348 ZNFX1Q9P2E3 1918 aaKnown RBP2.97□□□□□ -1.93
CD44-217ENST00000525348 CASZ1Q86V15 1759 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 UMODL1Q5DID0 1318 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 MARF1Q9Y4F3 1742 aaKnown RBP2.97□□□□□ -1.93
CD44-217ENST00000525348 SMIM30A4D0T7 59 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 C12orf71A8MTZ7 269 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 H0Y8G0 127 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 TMX2-CTNND1H3BSU7 103 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 TCAPO15273 167 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 CTNSO60931 367 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 SCN2BO60939 215 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 MED6O75586 246 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 SULT1C4O75897 302 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 LDOC1O95751 146 aaPredicted RBP2.97□□□□□ -1.93
CD44-217ENST00000525348 CALCAP01258 141 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 IFNA6P05013 189 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 FBP1P09467 338 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 OCM2P0CE71 109 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 OCMP0CE72 109 aaPredicted RBP2.97□□□□□ -1.93
CD44-217ENST00000525348 GIMD1P0DJR0 217 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 ADRB3P13945 408 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 ETS1P14921 441 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 SRMP19623 302 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 KLK2P20151 261 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 WARSP23381 471 aaKnown RBP2.97□□□□□ -1.93
CD44-217ENST00000525348 LAP3P28838 519 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 CD1BP29016 333 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 CHRNA3P32297 505 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 CDKN2CP42773 168 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 BTDP43251 543 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 SYKP43405 635 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 CAPZBP47756 277 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 EMP2P54851 167 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 PRPS1P60891 318 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 CXCR4P61073 352 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 STX1BP61266 288 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 NPRL3Q12980 569 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 AQP6Q13520 282 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 GPR176Q14439 515 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 CAMK4Q16566 473 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 CDO1Q16878 200 aa2.97□□□□□ -1.93
CD44-217ENST00000525348 Q1RN00 199 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms