RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 PTDSS2Q9BVG9 487 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 ASPNQ9BXN1 380 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 SLC19A3Q9BZV2 496 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 CALHM2Q9HA72 323 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 KRCC1Q9NPI7 259 aaPredicted RBP13.4□□□□□ -0.26
NUP54-213ENST00000513352 CLCF1Q9UBD9 225 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 TRAPPC4Q9Y296 219 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 MEMO1Q9Y316 297 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 SAMHD1Q9Y3Z3 626 aaKnown RBP13.4□□□□□ -0.26
NUP54-213ENST00000513352 ZNF175Q9Y473 711 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 U3KQV3 271 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 SPENQ96T58 3664 aaKnown RBP13.4□□□□□ -0.26
NUP54-213ENST00000513352 DOCK7Q96N67 2140 aa13.4□□□□□ -0.26
NUP54-213ENST00000513352 MED12LQ86YW9 2145 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 A0A087WUU8 490 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 CD8B2A6NJW9 211 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 LRRN3E7EW58 273 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 J3QKU1 62 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 EIF1BO60739 113 aaKnown RBP13.39□□□□□ -0.27
NUP54-213ENST00000513352 E2F6O75461 281 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 KRT36O76013 467 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 TGM6O95932 706 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 IL2RAP01589 272 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 HIST1H2ABP04908 130 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 KLK2P20151 261 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 C4orf17Q53FE4 359 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 OTUD3Q5T2D3 398 aaPredicted RBP13.39□□□□□ -0.27
NUP54-213ENST00000513352 FCRLAQ7L513 359 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 HIST3H2AQ7L7L0 130 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 MEX3DQ86XN8 651 aaKnown RBP13.39□□□□□ -0.27
NUP54-213ENST00000513352 C10orf67Q8IYJ2 551 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 CDK20Q8IZL9 346 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 GCNT2Q8N0V5 402 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 C9orf106Q8NAJ2 232 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 PAPD5Q8NDF8 572 aaKnown RBP13.39□□□□□ -0.27
NUP54-213ENST00000513352 PIGXQ8TBF5 258 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 SLC7A13Q8TCU3 470 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 HIST1H2ACQ93077 130 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 WNT2BQ93097 391 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 MOGAT1Q96PD6 335 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 ALPK1Q96QP1 1244 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 TM9SF2Q99805 663 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 TTYH2Q9BSA4 534 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 ZNF426Q9BUY5 554 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 MEPEQ9NQ76 525 aaPredicted RBP13.39□□□□□ -0.27
NUP54-213ENST00000513352 C20orf141Q9NUB4 165 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 KLHL13Q9P2N7 655 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 LYVE1Q9Y5Y7 322 aa13.39□□□□□ -0.27
NUP54-213ENST00000513352 DIDO1Q9BTC0 2240 aaKnown RBP13.39□□□□□ -0.27
NUP54-213ENST00000513352 M0R082 166 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 SMAD9O15198 467 aaKnown RBP13.38□□□□□ -0.27
NUP54-213ENST00000513352 HNRNPRO43390 633 aaKnown RBP13.38□□□□□ -0.27
NUP54-213ENST00000513352 DNPH1O43598 174 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 RRP9O43818 475 aaKnown RBP13.38□□□□□ -0.27
NUP54-213ENST00000513352 OR10H3O60404 316 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 ENTPD5O75356 428 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 DEAF1O75398 565 aaPredicted RBP13.38□□□□□ -0.27
NUP54-213ENST00000513352 OR7A10O76100 309 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 AQP8O94778 261 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 LDLRP01130 860 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 BGLAPP02818 100 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 GLI4P10075 376 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 SAGP10523 405 aaPredicted RBP13.38□□□□□ -0.27
NUP54-213ENST00000513352 GRPRP30550 384 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 GPR4P46093 362 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 LSM11P83369 360 aaKnown RBP eCLIP13.38□□□□□ -0.27
NUP54-213ENST00000513352 PMS2P3Q13401 168 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 MFSD13AQ14CX5 517 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 SEC23BQ15437 767 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 ZFP1Q6P2D0 407 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 MBOAT2Q6ZWT7 520 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 MAMDC2Q7Z304 686 aaPredicted RBP13.38□□□□□ -0.27
NUP54-213ENST00000513352 ADGRE4PQ86SQ3 457 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 TMEM99Q8N816 258 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 OR4K5Q8NGD3 323 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 ZNF417Q8TAU3 575 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 ABHD3Q8WU67 409 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 RND1Q92730 232 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 BPIFA2Q96DR5 249 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 ZNF587Q96SQ5 575 aaPredicted RBP13.38□□□□□ -0.27
NUP54-213ENST00000513352 NANSQ9NR45 359 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 ARMC1Q9NVT9 282 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 VNN3Q9NY84 501 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 DNAJB9Q9UBS3 223 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 CLEC4AQ9UMR7 237 aa13.38□□□□□ -0.27
NUP54-213ENST00000513352 SMG1Q96Q15 3661 aaKnown RBP13.37□□□□□ -0.27
NUP54-213ENST00000513352 HIVEP3Q5T1R4 2406 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 SH3PXD2BA1X283 911 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 MBD3L4A6NDZ8 208 aaPredicted RBP13.37□□□□□ -0.27
NUP54-213ENST00000513352 MBD3L3A6NE82 208 aaPredicted RBP13.37□□□□□ -0.27
NUP54-213ENST00000513352 MBD3L5A6NJ08 208 aaPredicted RBP13.37□□□□□ -0.27
NUP54-213ENST00000513352 FTCDNL1E5RQL4 147 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 CLOCKO15516 846 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 CCNB2O95067 398 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 MT-ATP6P00846 226 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 TMIGD3P0DMS9 266 aaPredicted RBP13.37□□□□□ -0.27
NUP54-213ENST00000513352 FCGR1AP12314 374 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 FASP25445 335 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 CTBP2P56545 445 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 SIRPAP78324 504 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms